Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB6N03_RS04425 Genome accession   NZ_CP163511
Coordinates   888635..889231 (-) Length   198 a.a.
NCBI ID   WP_023289053.1    Uniprot ID   A0A2N4W2M8
Organism   Klebsiella quasipneumoniae strain 109     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 883635..894231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6N03_RS04410 (AB6N03_04410) helD 883846..885900 (-) 2055 WP_109546484.1 DNA helicase IV -
  AB6N03_RS04415 (AB6N03_04415) - 886025..886471 (+) 447 WP_004201437.1 YccF domain-containing protein -
  AB6N03_RS04420 (AB6N03_04420) yccS 886489..888624 (+) 2136 WP_023289054.1 YccS family putative transporter -
  AB6N03_RS04425 (AB6N03_04425) sxy/tfoX 888635..889231 (-) 597 WP_023289053.1 TfoX/Sxy family DNA transformation protein Regulator
  AB6N03_RS04430 (AB6N03_04430) - 889249..889554 (-) 306 WP_158238131.1 hypothetical protein -
  AB6N03_RS04435 (AB6N03_04435) sulA 889580..890089 (+) 510 WP_023289052.1 SOS-induced cell division inhibitor SulA -
  AB6N03_RS04440 (AB6N03_04440) ompA 890442..891512 (+) 1071 WP_023289051.1 porin OmpA -
  AB6N03_RS04445 (AB6N03_04445) matP 891659..892111 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  AB6N03_RS04450 (AB6N03_04450) - 892297..894054 (+) 1758 WP_205425290.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22670.34 Da        Isoelectric Point: 10.2333

>NTDB_id=1030233 AB6N03_RS04425 WP_023289053.1 888635..889231(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain 109]
MRKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKYRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWASAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1030233 AB6N03_RS04425 WP_023289053.1 888635..889231(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain 109]
ATGAGAAAACTCGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCTCCGCTGGGCCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGGAATATTTATCTAAAGGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACACGGGCGCATCGTGCCGCTAAAG
TATTATCAAATCGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTGTCGCTGATGTCGTGGCAGAGCGCCCA
ACGTGAAAAATATCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCCAATATCAGTTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGCGAGAATAAT
GCTTCCCTATCGCACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTTCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGTCTGCGCGCTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N4W2M8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

49.746

99.495

0.495

Multiple sequence alignment