Detailed information NTG1030199

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: AB6N01_RS09245
• Genome accession: NZ_CP163509
• Coordinates: 1940289..1941314 (-)
• Length: 341 a.a.
• NCBI ID: WP_369327213.1
• Uniprot ID: -
• Organism: Alcaligenes nematophilus strain 101
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1935289..1946314

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB6N01_RS09220 (AB6N01_09220)	nusB	1935387..1935872 (-)	486	WP_009454782.1	transcription antitermination factor NusB	-
AB6N01_RS09225 (AB6N01_09225)	ribH	1935856..1936374 (-)	519	WP_009454781.1	6,7-dimethyl-8-ribityllumazine synthase	-
AB6N01_RS09230 (AB6N01_09230)	ribBA	1936389..1937555 (-)	1167	WP_009454780.1	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	-
AB6N01_RS09235 (AB6N01_09235)	-	1937671..1938498 (+)	828	WP_022983222.1	IclR family transcriptional regulator	-
AB6N01_RS09240 (AB6N01_09240)	-	1938618..1940147 (+)	1530	WP_369327113.1	CHAD domain-containing protein	-
AB6N01_RS09245 (AB6N01_09245)	pilA	1940289..1941314 (-)	1026	WP_369327213.1	signal recognition particle-docking protein FtsY	Machinery gene
AB6N01_RS09250 (AB6N01_09250)	rsmD	1941835..1942464 (+)	630	WP_009454775.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
AB6N01_RS09255 (AB6N01_09255)	coaD	1942485..1942991 (+)	507	WP_009454773.1	pantetheine-phosphate adenylyltransferase	-
AB6N01_RS09260 (AB6N01_09260)	-	1943077..1943334 (+)	258	WP_009454772.1	YfhL family 4Fe-4S dicluster ferredoxin	-
AB6N01_RS09265 (AB6N01_09265)	-	1943398..1943790 (-)	393	WP_115634358.1	MOSC N-terminal beta barrel domain-containing protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 35878.37 Da
• Isoelectric Point: 5.4568

>NTDB_id=1030199 AB6N01_RS09245 WP_369327213.1 1940289..1941314(-) (pilA) [Alcaligenes nematophilus strain 101]
MQPTPEPEPEIVPVPAPQPDPAPAPTPEPEAAAPVVKTSWMARLKQGLSRTGQSLSSLFVGAKVDETLFEELEDALLMAD
AGVEATEKLITALRARVRKEKISDAAQVKQILCDILTDHLKPLEKSFPLESSKPLVVMIAGVNGAGKTTSIGKLAHTFQE
QGAKVLLAAGDTFRAAAREQLIEWGTRNNVSVIAQDGGDPAAVAFDAVHAGRARDMGVVMVDTAGRLPTQLHLMEELKKI
KRVIGKADGQAPHEILLVVDGNTGQNAISQIRAFDAALGLTGLVVTKLDGTAKGGTLAAVAACAQGVRPIPVYWIGVGEG
MQDLQAFVAREFASALLGMNA

Nucleotide

• Length: 1026 bp

>NTDB_id=1030199 AB6N01_RS09245 WP_369327213.1 1940289..1941314(-) (pilA) [Alcaligenes nematophilus strain 101]
ATACAGCCGACTCCTGAACCGGAGCCAGAGATTGTTCCAGTTCCTGCGCCACAGCCTGACCCAGCACCTGCCCCGACGCC
AGAGCCAGAAGCCGCCGCACCTGTGGTGAAAACTTCCTGGATGGCACGCTTGAAACAGGGCTTGTCGCGTACCGGTCAGA
GCTTGAGCAGCCTGTTCGTCGGTGCCAAGGTTGATGAAACGCTGTTCGAGGAACTGGAAGACGCCTTGCTGATGGCAGAC
GCGGGTGTTGAGGCTACCGAGAAACTGATTACCGCTTTGCGTGCTCGTGTTCGTAAGGAAAAAATCAGCGATGCGGCCCA
GGTCAAACAGATCCTGTGTGACATCCTGACCGATCATTTGAAGCCCCTGGAGAAATCCTTTCCTTTGGAATCGAGCAAAC
CACTGGTAGTCATGATTGCCGGGGTGAATGGTGCAGGTAAAACCACATCTATCGGTAAGTTGGCTCACACCTTCCAGGAG
CAGGGCGCAAAAGTCTTGTTGGCCGCCGGTGATACCTTCCGTGCTGCCGCTCGTGAACAGCTGATTGAATGGGGCACCCG
CAATAACGTCAGTGTTATTGCTCAAGACGGTGGTGACCCCGCCGCGGTGGCGTTTGATGCTGTGCATGCAGGCCGTGCCC
GCGATATGGGCGTGGTCATGGTGGATACCGCCGGCCGTTTGCCAACCCAGCTTCACCTGATGGAAGAGCTCAAGAAGATC
AAGCGCGTCATCGGCAAGGCCGATGGTCAGGCTCCTCATGAAATTCTCTTGGTTGTGGACGGCAATACCGGCCAGAACGC
CATTTCCCAGATCCGTGCCTTTGATGCGGCCTTGGGGCTGACTGGCCTGGTGGTTACCAAGCTGGACGGTACGGCCAAAG
GCGGGACGCTGGCTGCCGTTGCTGCCTGTGCGCAAGGCGTACGTCCTATTCCGGTGTACTGGATTGGCGTGGGCGAGGGC
ATGCAGGATCTGCAAGCCTTTGTGGCCCGTGAGTTTGCGTCGGCCTTGTTGGGCATGAACGCTTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (135-338)

• SRP54-type protein, helical bundle domain (SRP54_N) (52-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	59.15	89.736	0.531