Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AACH36_RS19090 Genome accession   NZ_AP027939
Coordinates   4174227..4175666 (-) Length   479 a.a.
NCBI ID   WP_338611373.1    Uniprot ID   -
Organism   Aeromonas enteropelogenes strain VA111     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4169227..4180666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH36_RS19060 (VAWG006_37350) - 4169587..4170948 (+) 1362 WP_026456105.1 Do family serine endopeptidase -
  AACH36_RS19065 (VAWG006_37360) degS 4171039..4172142 (+) 1104 WP_338611372.1 outer membrane-stress sensor serine endopeptidase DegS -
  AACH36_RS19070 (VAWG006_37370) npr 4172264..4172536 (-) 273 WP_026456107.1 PTS phosphocarrier protein NPr -
  AACH36_RS19075 (VAWG006_37380) rapZ 4172557..4173423 (-) 867 WP_042070881.1 RNase adapter RapZ -
  AACH36_RS19080 (VAWG006_37390) ptsN 4173469..4173915 (-) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  AACH36_RS19085 (VAWG006_37400) hpf 4173918..4174205 (-) 288 WP_005336323.1 ribosome hibernation promoting factor -
  AACH36_RS19090 (VAWG006_37410) rpoN/rpoN1 4174227..4175666 (-) 1440 WP_338611373.1 RNA polymerase factor sigma-54 Machinery gene
  AACH36_RS19095 (VAWG006_37420) lptB 4175732..4176457 (-) 726 WP_026456111.1 LPS export ABC transporter ATP-binding protein -
  AACH36_RS19100 (VAWG006_37430) lptA 4176461..4176988 (-) 528 WP_026456112.1 lipopolysaccharide transport periplasmic protein LptA -
  AACH36_RS19105 (VAWG006_37440) lptC 4176975..4177535 (-) 561 WP_026456113.1 LPS export ABC transporter periplasmic protein LptC -
  AACH36_RS19110 (VAWG006_37450) kdsC 4177532..4178086 (-) 555 WP_026456114.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  AACH36_RS19115 (VAWG006_37460) - 4178086..4179081 (-) 996 WP_201980594.1 KpsF/GutQ family sugar-phosphate isomerase -
  AACH36_RS19120 (VAWG006_37470) mlaF 4179289..4180089 (+) 801 WP_026456358.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54048.89 Da        Isoelectric Point: 4.3230

>NTDB_id=103010 AACH36_RS19090 WP_338611373.1 4174227..4175666(-) (rpoN/rpoN1) [Aeromonas enteropelogenes strain VA111]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSSLELQQEIQQALENNPLLEQEESEVQETSPQDQVDASQLDSSDAMAQDQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGDDTVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVSLED
IQAAVSSDEVEVELDEIEVVLKRVQHFDPVGIAARSVQECLLIQLEQYDPETPWISEVKEVIQEHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKRQNRWVVELNPDSSPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=103010 AACH36_RS19090 WP_338611373.1 4174227..4175666(-) (rpoN/rpoN1) [Aeromonas enteropelogenes strain VA111]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAATCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCTTCTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAATCCCCTGCTGGAGCAGGAAGAGAGCGAGG
TGCAGGAGACATCCCCGCAAGATCAGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAGGATCAGATGCCG
GACGAGTTGCCGGTGGATACGACCTGGGACGAGGTCTATTCCGCAGGGACGGCCCAGAGTGCCGGACCCATTCATGATGG
GGATGACACCGTCTACCAGGGGGAGACCACCGAGAACCTGCAGGACTACCTGTTGTGGCAGATGCGCCTCACCCCGTTCA
GCGATGTGGATGCCGCCATCGCGCTTGCCATCATAGATGCCATCGACGAATCCGGTTATCTGACTGTGTCGCTGGAAGAT
ATCCAGGCGGCGGTTAGCAGCGACGAGGTGGAAGTCGAACTCGACGAAATCGAGGTCGTGCTCAAGCGGGTGCAACACTT
CGATCCGGTGGGAATTGCCGCCCGTTCGGTGCAGGAGTGCCTGCTGATCCAGCTGGAGCAGTACGACCCCGAGACTCCCT
GGATCAGTGAGGTCAAGGAGGTGATCCAGGAGCACATGGATCTGCTTGGCAACCGCGATTACCGCACCCTGGCCCGCAAG
ACTCGACTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGTTGGAGCCACGGCCGGGCAACGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCGGACGTCTCCGTAGTCAAACGGCAGAATCGCTGGGTGGTGGAACTCAATCCTG
ATTCATCCCCGCGCATCCGGGTCAACGAGACCTATGCCGCTATGGCACGTAACGCCCGTAGCAGCACGGATACCCAGTTT
ATCCGTTCCCACTTGCAGGAAGCAAAGTGGTTCATCAAGAGCCTTGAGAGCCGCAACGACACCCTGTTGAAAGTGGCCAG
CTGCATCGTCGAGCAGCAACAGGGCTTTTTCGAATATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAACGATATCGCCG
AAGCGGTGGAGATGCACGAGTCGACCATCTCCCGTGTAACAACCCAGAAATACATGCATACCCCCCGCGGTATTTTCGAA
CTGAAGTTTTTTTTCTCCAGCCATGTGAATACAGAAGGAGGAGGAGAGTGCTCATCGACCGCAATCCGTGCGCTCATCAA
GAAGCTGGTGACGGCGGAGAACCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCTAGACGCACGATCGCTAAGTACCGCGAATCCCTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.686

100

0.486

Multiple sequence alignment