Detailed information NTG1030089

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: AB5985_RS02290
• Genome accession: NZ_CP163499
• Coordinates: 480236..481378 (-)
• Length: 380 a.a.
• NCBI ID: WP_146253662.1
• Uniprot ID: -
• Organism: Burkholderia cepacia strain JK6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 475236..486378

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5985_RS02270 (AB5985_02270)	-	475786..476169 (+)	384	WP_027789089.1	nuclear transport factor 2 family protein	-
AB5985_RS02275 (AB5985_02275)	leuA	476312..477958 (-)	1647	WP_369324410.1	2-isopropylmalate synthase	-
AB5985_RS02280 (AB5985_02280)	ybiB	478339..479313 (-)	975	WP_027789091.1	DNA-binding protein YbiB	-
AB5985_RS02285 (AB5985_02285)	maiA	479508..480152 (+)	645	WP_060084181.1	maleylacetoacetate isomerase	-
AB5985_RS02290 (AB5985_02290)	pilA	480236..481378 (-)	1143	WP_146253662.1	signal recognition particle-docking protein FtsY	Machinery gene
AB5985_RS02295 (AB5985_02295)	rsmD	481595..482209 (+)	615	WP_027789093.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
AB5985_RS02300 (AB5985_02300)	coaD	482321..482818 (+)	498	WP_021163047.1	pantetheine-phosphate adenylyltransferase	-
AB5985_RS02305 (AB5985_02305)	-	483020..484006 (+)	987	WP_369324411.1	tyrosine-type recombinase/integrase	-
AB5985_RS02310 (AB5985_02310)	-	484148..484333 (-)	186	WP_369324412.1	hypothetical protein	-

Sequence

Protein

• Length: 380 a.a.
• Molecular weight: 40531.42 Da
• Isoelectric Point: 4.8018

>NTDB_id=1030089 AB5985_RS02290 WP_146253662.1 480236..481378(-) (pilA) [Burkholderia cepacia strain JK6]
MFSFFKRFKKTQEPDPAESQSADAQQTDEPSDAPAVEAPPAAEVPQPAAPAVVMTVTPTNDGRDEVVETVEIVPPPLQDA
TAKKSWLARLKTGLAKTGSSITGVFVNTKIDEDLYEELETALLMSDAGVDATEYLLGALREKVRAGRLTDPQQVKAALHD
LLVELLTPLEKSLMLGRAQPLVMMITGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNVTVVQ
QESGDPAAVIFDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTGQNALTQVKAF
DDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADALLG

Nucleotide

• Length: 1143 bp

>NTDB_id=1030089 AB5985_RS02290 WP_146253662.1 480236..481378(-) (pilA) [Burkholderia cepacia strain JK6]
ATGTTCAGCTTCTTCAAACGATTCAAGAAAACGCAGGAGCCCGATCCGGCGGAATCGCAATCGGCCGACGCGCAGCAAAC
GGACGAACCGTCCGATGCGCCCGCGGTCGAGGCCCCGCCTGCGGCCGAGGTGCCGCAACCGGCCGCGCCGGCCGTCGTGA
TGACGGTCACGCCGACCAACGACGGCCGCGACGAAGTCGTCGAGACGGTCGAAATCGTTCCGCCGCCGCTGCAGGACGCC
ACCGCGAAGAAATCGTGGCTCGCCCGCCTGAAAACGGGGCTCGCCAAGACGGGCTCGAGCATCACCGGCGTCTTCGTCAA
CACGAAGATCGACGAGGATCTGTACGAGGAGCTCGAAACCGCGCTGCTGATGTCCGACGCGGGCGTCGACGCGACCGAGT
ACCTGCTCGGCGCGCTACGTGAAAAGGTGCGCGCGGGCCGCCTGACCGACCCGCAGCAGGTGAAGGCCGCGCTGCACGAC
CTGCTCGTCGAGTTGCTGACGCCGCTCGAGAAGTCGCTGATGCTCGGCCGCGCGCAGCCGCTCGTGATGATGATCACCGG
CGTGAACGGTGCGGGCAAGACGACCAGCATCGGCAAGCTCGCAAAGCATCTGCAGAGCTTCGACCAGTCGGTGCTGCTGG
CCGCGGGCGACACGTTCCGCGCGGCCGCGCGCGAACAGCTGGCGGTCTGGGGCGAGCGCAACAACGTGACGGTCGTGCAG
CAGGAAAGCGGCGATCCGGCCGCGGTGATCTTCGACGCGGTCAGCGCCGCGCGCGCGCGCAAGATCGACGTGATGATGGC
CGACACGGCCGGCCGCCTGCCGACGCAGCTCCACCTGATGGAGGAGCTGAAGAAGGTGAAGCGCGTGATCTCGAAGGCGC
ACGACGGCGCGCCGCACGAAGTGCTGCTGGTGATCGACGCGAACACCGGCCAGAACGCGCTCACGCAGGTCAAGGCATTC
GACGACGCGCTCGGCCTCACCGGCCTCATCGTCACGAAGCTCGACGGCACCGCGAAGGGCGGGATTCTCGCCGCGATCGC
GCGGCAGCGCCCGGTGCCGGTCTACTTCATCGGCGTCGGCGAGAAGGTCGAGGATCTGCAGCCGTTCAGCGCGGTCGAAT
TCGCGGACGCGCTGCTCGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (181-380)

• SRP54-type protein, helical bundle domain (SRP54_N) (98-160)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	55.048	100	0.603