Detailed information NTG1030033

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: AB4K06_RS21670
• Genome accession: NZ_CP163458
• Coordinates: 4114633..4115778 (+)
• Length: 381 a.a.
• NCBI ID: WP_003227549.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain N33
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 4109633..4120778

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4K06_RS21645 (AB4K06_21645)	albF	4109649..4110929 (+)	1281	WP_003242974.1	pitrilysin family protein	-
AB4K06_RS21650 (AB4K06_21650)	albG	4110926..4111627 (+)	702	WP_003243391.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
AB4K06_RS21655 (AB4K06_21655)	ywhL	4111633..4113009 (-)	1377	WP_003244415.1	YncE family protein	-
AB4K06_RS21660 (AB4K06_21660)	ywhK	4113048..4114403 (-)	1356	WP_003227552.1	YncE family protein	-
AB4K06_RS21665 (AB4K06_21665)	-	4114400..4114630 (-)	231	WP_009968328.1	hypothetical protein	-
AB4K06_RS21670 (AB4K06_21670)	rapF	4114633..4115778 (+)	1146	WP_003227549.1	response regulator aspartate phosphatase RapF	Regulator
AB4K06_RS21675 (AB4K06_21675)	phrF	4115762..4115881 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
AB4K06_RS21680 (AB4K06_21680)	ywhH	4115980..4116453 (+)	474	WP_003227547.1	YbaK/EbsC family protein	-
AB4K06_RS21685 (AB4K06_21685)	speB	4116485..4117357 (-)	873	WP_003227545.1	agmatinase	-
AB4K06_RS21690 (AB4K06_21690)	speE	4117418..4118248 (-)	831	WP_003227543.1	spermidine synthase	-
AB4K06_RS21695 (AB4K06_21695)	pbpG	4118450..4120525 (+)	2076	WP_003227540.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45609.09 Da
• Isoelectric Point: 5.1503

>NTDB_id=1030033 AB4K06_RS21670 WP_003227549.1 4114633..4115778(+) (rapF) [Bacillus subtilis strain N33]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=1030033 AB4K06_RS21670 WP_003227549.1 4114633..4115778(+) (rapF) [Bacillus subtilis strain N33]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAACTTCTTCAG
AGGCATGTACGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGGAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATAGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (223-290)

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	100	100	1
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572