Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   YSS_RS08970 Genome accession   NZ_CP007181
Coordinates   1726343..1727848 (-) Length   501 a.a.
NCBI ID   WP_025399315.1    Uniprot ID   -
Organism   Campylobacter coli RM4661     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1721343..1732848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSS_RS10600 (YSS_09155) - 1722500..1722709 (-) 210 WP_002825645.1 alkylphosphonate utilization protein -
  YSS_RS08950 (YSS_09160) - 1722758..1723498 (-) 741 WP_002785461.1 TerC family protein -
  YSS_RS08955 (YSS_09165) purN 1723723..1724298 (-) 576 WP_002825646.1 phosphoribosylglycinamide formyltransferase -
  YSS_RS08960 (YSS_09170) - 1724289..1725659 (-) 1371 WP_002825647.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  YSS_RS08965 (YSS_09175) - 1725643..1726341 (-) 699 WP_002778537.1 NYN domain-containing protein -
  YSS_RS08970 (YSS_09180) comM 1726343..1727848 (-) 1506 WP_025399315.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  YSS_RS08975 (YSS_09185) def 1727845..1728372 (-) 528 WP_002825650.1 peptide deformylase -
  YSS_RS08980 (YSS_09190) clpP 1728401..1728985 (-) 585 WP_002825652.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  YSS_RS08985 (YSS_09195) tig 1728985..1730319 (-) 1335 WP_025399316.1 trigger factor -
  YSS_RS08990 (YSS_09200) folE 1730463..1731035 (+) 573 WP_002825654.1 GTP cyclohydrolase I FolE -
  YSS_RS08995 (YSS_09205) fliI 1731035..1732420 (+) 1386 WP_002825656.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56635.66 Da        Isoelectric Point: 8.4728

>NTDB_id=103000 YSS_RS08970 WP_025399315.1 1726343..1727848(-) (comM) [Campylobacter coli RM4661]
MKKLQCVSFDENLDIIDVESTFTRGLPNLSIVGLANIAIKESIERIKATLLTCNFSFPAKKITINLSPSGIPKKGSHFDL
VIATLILLQNEDFDDFFVVGELGLDGSIKSTNELFSLLLFLSTKVKSAKVVVPKNIALKASMIPNLEIYGLEHLNEVIEF
FKEKNYEKFKFIQSHPLFANPLIIENEIFIKNHHFELDFKDIKGQEKAKRACLIAALGMHNILFEGSPGSGKSMCAKRLV
EIMPPQSLDEVLMQNAYMSLNSKDCEFTQKRALRHPHHTSTRASIFGGGAKNAKIGEIALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKTTYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKRYKNHISAPIMDRIDLYVAMDEISK
DDKSSINSKEMSERILKAFIFGKKRGQKEFNGKLNDTELQKFCILEKDAKDTLDLAISRYNLSQRALNKILKVSRSIADF
EEKELLSKNHILEALSFRMRS

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=103000 YSS_RS08970 WP_025399315.1 1726343..1727848(-) (comM) [Campylobacter coli RM4661]
ATGAAAAAATTACAATGTGTAAGCTTTGATGAGAATTTAGATATCATCGATGTAGAGTCTACATTTACAAGAGGCTTGCC
TAATTTAAGCATAGTCGGACTTGCAAATATTGCAATCAAAGAAAGTATCGAGCGTATCAAAGCCACACTTTTAACTTGCA
ATTTTTCATTTCCTGCTAAAAAAATCACCATCAATCTTAGCCCTTCAGGAATTCCAAAAAAAGGTTCTCATTTTGATTTA
GTTATCGCTACGCTTATATTGTTGCAAAATGAAGACTTTGATGATTTTTTTGTGGTAGGCGAGCTTGGTCTTGATGGAAG
TATCAAAAGCACTAATGAGCTTTTTTCTTTACTTTTATTTTTATCCACAAAGGTAAAAAGTGCAAAAGTTGTAGTCCCAA
AAAATATAGCTCTAAAAGCTTCTATGATACCTAATCTAGAAATTTATGGACTTGAGCATTTAAATGAAGTGATTGAATTT
TTTAAAGAAAAAAACTATGAGAAATTCAAATTCATCCAAAGCCATCCTTTATTTGCAAATCCTTTGATTATAGAAAATGA
AATTTTTATTAAAAATCATCATTTTGAACTTGATTTTAAAGATATCAAAGGACAAGAAAAAGCTAAAAGAGCTTGTTTGA
TAGCAGCACTAGGCATGCATAATATACTTTTTGAAGGAAGTCCAGGAAGTGGCAAAAGTATGTGTGCAAAACGCCTTGTT
GAAATTATGCCTCCGCAAAGTTTAGATGAGGTTTTAATGCAAAATGCTTATATGTCTTTAAATTCTAAAGATTGTGAATT
TACGCAAAAAAGAGCCTTAAGACACCCTCATCATACCTCTACAAGAGCTAGTATTTTTGGTGGTGGAGCAAAAAATGCGA
AGATAGGTGAAATCGCTCTAGCTAATGGAGGAGTTTTATTTTTTGATGAATTTCCTCATTTTAACAAACAGATTATCGAA
AGTCTAAGAGAACCTCTAGAAGATCATAAAATTCATATTTCAAGAGTCAATTCAAAAACGACTTATGAAACTAAATTCAG
TTTTATTGCCGCTCAAAATCCTTGTCCGTGTGGAAATTTATTTTCTAAAAACCTATCTTGCGTTTGCAGTGAAAATGAGA
TTAAAAGATATAAAAATCATATTTCAGCCCCTATTATGGATAGAATTGATCTTTATGTAGCTATGGATGAGATCAGCAAA
GATGATAAGTCAAGTATAAATTCAAAGGAAATGAGTGAAAGAATTTTAAAGGCTTTTATCTTTGGCAAAAAACGCGGCCA
AAAAGAATTTAATGGCAAATTAAACGATACAGAATTGCAAAAATTTTGTATTTTAGAAAAAGATGCCAAGGATACTTTGG
ATTTAGCCATTTCGCGTTATAATCTTTCACAAAGAGCTTTAAATAAAATTTTAAAAGTTTCAAGATCTATTGCAGATTTT
GAAGAAAAAGAACTTCTTAGTAAAAATCATATTTTAGAAGCTTTGAGTTTTAGGATGAGGAGTTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(18-135)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

45.691

99.601

0.455