Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AB4K06_RS13615 Genome accession   NZ_CP163458
Coordinates   2609434..2610054 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain N33     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2604434..2615054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4K06_RS13575 (AB4K06_13575) ptsA 2605565..2606071 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  AB4K06_RS13580 (AB4K06_13580) ypqA 2606209..2606628 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  AB4K06_RS13585 (AB4K06_13585) sppG 2606649..2607026 (-) 378 WP_004398696.1 YppG family protein -
  AB4K06_RS13590 (AB4K06_13590) yppF 2607214..2607402 (+) 189 WP_003230690.1 YppF family protein -
  AB4K06_RS13595 (AB4K06_13595) yppE 2607441..2607812 (-) 372 WP_003246080.1 YppE family protein -
  AB4K06_RS13600 (AB4K06_13600) yppD 2607858..2608103 (-) 246 WP_004398488.1 YppD family protein -
  AB4K06_RS13605 (AB4K06_13605) sspM 2608302..2608406 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  AB4K06_RS13610 (AB4K06_13610) yppC 2608431..2609393 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  AB4K06_RS13615 (AB4K06_13615) recU 2609434..2610054 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  AB4K06_RS13620 (AB4K06_13620) ponA 2610076..2612820 (+) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  AB4K06_RS13625 (AB4K06_13625) ypoC 2612896..2613390 (-) 495 WP_009967579.1 YpoC family protein -
  AB4K06_RS13630 (AB4K06_13630) nth 2613387..2614046 (-) 660 WP_009967580.1 endonuclease III -
  AB4K06_RS13635 (AB4K06_13635) dnaD 2614065..2614763 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1029994 AB4K06_RS13615 WP_004399067.1 2609434..2610054(+) (recU) [Bacillus subtilis strain N33]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1029994 AB4K06_RS13615 WP_004399067.1 2609434..2610054(+) (recU) [Bacillus subtilis strain N33]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment