Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   CS897_RS02480 Genome accession   NZ_LT635459
Coordinates   498389..499594 (-) Length   401 a.a.
NCBI ID   WP_089086745.1    Uniprot ID   -
Organism   Helicobacter pylori isolate HE132/09     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 493389..504594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS897_RS02455 - 493830..494057 (-) 228 Protein_471 replication regulatory RepB family protein -
  CS897_RS02460 - 494027..494911 (-) 885 WP_089086741.1 ATPase, T2SS/T4P/T4SS family -
  CS897_RS02465 - 494916..495191 (-) 276 WP_089086742.1 hypothetical protein -
  CS897_RS02470 - 495208..496170 (-) 963 WP_089086743.1 hypothetical protein -
  CS897_RS02475 - 496183..498405 (-) 2223 WP_089086744.1 RGS domain-containing GTPase-activating protein -
  CS897_RS02480 comB10 498389..499594 (-) 1206 WP_089086745.1 DNA type IV secretion system protein ComB10 Machinery gene
  CS897_RS02485 - 499591..501246 (-) 1656 WP_000617227.1 TrbG/VirB9 family P-type conjugative transfer protein -
  CS897_RS02490 - 501243..502379 (-) 1137 WP_089086746.1 VirB8/TrbF family protein -
  CS897_RS08410 - 502372..502512 (-) 141 WP_000789928.1 hypothetical protein -

Sequence

Protein


Download         Length: 401 a.a.        Molecular weight: 44905.59 Da        Isoelectric Point: 10.1066

>NTDB_id=1029980 CS897_RS02480 WP_089086745.1 498389..499594(-) (comB10) [Helicobacter pylori isolate HE132/09]
MKQSLLKKIGLGVGGFVVLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKKAKETPEVTTQEPTTQTSP
NPSVSANPNIKDYSHLNNNLNQQNNTITHLQQVLQSPSKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPEMEYGVDSFT
NLKYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLN
IAWTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGDY
LLMQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLIKTKEEINNEEE
I

Nucleotide


Download         Length: 1206 bp        

>NTDB_id=1029980 CS897_RS02480 WP_089086745.1 498389..499594(-) (comB10) [Helicobacter pylori isolate HE132/09]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGTTGTTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGTGAGAGTAAATTCCCTTTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAGCCAAAAAAAGCCAAAGAAACACCAGAAGTAACTACCCAAGAGCCTACAACACAAACTAGCCCC
AATCCTAGTGTTTCAGCTAATCCTAACATTAAAGATTATAGTCATCTTAACAACAATCTTAATCAGCAAAATAATACTAT
CACGCATTTACAACAAGTTTTACAAAGCCCCTCTAAAATAAAGCCTAAACCAAAGCATACTAAAGAGCAATTAGAATTTT
TAAACACACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGATGGAATACGGCGTGGATAGTTTTACT
AATTTAAAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACCGCTGATAGAATGATACCAGCCTT
TTTAATCACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGGGTA
GAGCGGTGCTAATCCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAATAACAATCAAATTGGACAATACCGCCTTAAC
ATTGCTTGGACTAGAATTATCACGCCTCAAGGCATAAACATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAGGGTTA
TAATGGCTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTAATG
GTCTTTTAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGATTAC
TTGCTTATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGGCAATATGGAGCGCA
AAACCCCATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAAAAG
ATGGGGAGGTTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCTAATCAAAACAAAAGAGGAAATTAACAATGAAGAAGAA
ATCTAA

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(177-367)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

52.821

97.257

0.514