Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB6N08_RS25010 Genome accession   NZ_CP163448
Coordinates   5170382..5171011 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O102:H6 strain M2021_10044824_1_E     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 5165382..5176011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6N08_RS24990 (AB6N08_24950) ycbZ 5165772..5167532 (-) 1761 WP_000156476.1 Lon protease family protein -
  AB6N08_RS24995 (AB6N08_24955) matP 5167718..5168170 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AB6N08_RS25000 (AB6N08_24960) ompA 5168245..5169297 (-) 1053 WP_000750418.1 porin OmpA -
  AB6N08_RS25005 (AB6N08_24965) sulA 5169654..5170163 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AB6N08_RS25010 (AB6N08_24970) sxy/tfoX 5170382..5171011 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AB6N08_RS25015 (AB6N08_24975) yccS 5170974..5173136 (-) 2163 WP_000875041.1 YccS family putative transporter -
  AB6N08_RS25020 (AB6N08_24980) yccF 5173146..5173592 (-) 447 WP_106470357.1 YccF domain-containing protein -
  AB6N08_RS25025 (AB6N08_24985) helD 5173715..5175769 (+) 2055 WP_020232990.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1029916 AB6N08_RS25010 WP_000839153.1 5170382..5171011(+) (sxy/tfoX) [Escherichia coli O102:H6 strain M2021_10044824_1_E]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1029916 AB6N08_RS25010 WP_000839153.1 5170382..5171011(+) (sxy/tfoX) [Escherichia coli O102:H6 strain M2021_10044824_1_E]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment