Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   BT137_RS13455 Genome accession   NZ_LT632617
Coordinates   2961017..2961610 (+) Length   197 a.a.
NCBI ID   WP_038839736.1    Uniprot ID   -
Organism   Legionella pneumophila strain ST42 isolate ST42     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2956017..2966610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BT137_RS13445 (EUL120_02677) dnaX 2958966..2960636 (+) 1671 WP_011216605.1 DNA polymerase III subunit gamma/tau -
  BT137_RS13450 (EUL120_02678) - 2960670..2961008 (+) 339 WP_011216606.1 YbaB/EbfC family nucleoid-associated protein -
  BT137_RS13455 (EUL120_02679) recR 2961017..2961610 (+) 594 WP_038839736.1 recombination mediator RecR Machinery gene
  BT137_RS13460 (EUL120_02680) - 2961603..2962463 (+) 861 WP_011216608.1 DUF547 domain-containing protein -
  BT137_RS13465 (EUL120_02681) - 2962460..2964457 (+) 1998 WP_038839738.1 sulfatase-like hydrolase/transferase -
  BT137_RS13470 (EUL120_02682) - 2964684..2966162 (-) 1479 WP_027265908.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21674.99 Da        Isoelectric Point: 6.6782

>NTDB_id=1029907 BT137_RS13455 WP_038839736.1 2961017..2961610(+) (recR) [Legionella pneumophila strain ST42 isolate ST42]
MDALSRLVEALRCLPGVGPKSAQRMVFHLLQHQRQRGLHLASCLEQAMKHISHCQQCNNYTEQTLCTLCQNPNRDSTLLC
VVESPADVSAIEQSNSFQGKYFVLMGKISPLDGLGPDDIGLPKLKELIIREKIQEVILALSPSVESQTTIHFIHQLLKDE
AVNISQLAHGIPSGGELEFLDGNTISSALKNRAVINV

Nucleotide


Download         Length: 594 bp        

>NTDB_id=1029907 BT137_RS13455 WP_038839736.1 2961017..2961610(+) (recR) [Legionella pneumophila strain ST42 isolate ST42]
ATGGATGCTCTAAGCCGCTTGGTAGAGGCGCTTCGCTGTCTTCCTGGTGTGGGACCAAAATCAGCACAAAGAATGGTGTT
CCATTTATTGCAGCACCAAAGACAGCGAGGTTTACACCTTGCCTCCTGTTTGGAACAGGCAATGAAGCACATTAGTCATT
GCCAGCAGTGTAATAATTACACCGAACAAACTCTGTGTACTCTTTGCCAAAACCCCAATCGAGATTCAACATTACTTTGC
GTGGTAGAGAGTCCAGCGGATGTTTCTGCCATAGAACAAAGCAATTCCTTTCAAGGTAAATATTTTGTCCTTATGGGAAA
AATTTCTCCTCTTGATGGCTTGGGACCTGATGACATAGGTCTACCGAAACTTAAGGAGTTAATTATTAGGGAAAAAATTC
AGGAAGTTATTCTTGCATTAAGCCCCAGTGTTGAAAGCCAGACCACAATTCATTTTATTCATCAGTTGCTAAAGGATGAA
GCCGTCAATATCAGTCAGTTAGCACATGGAATACCATCAGGTGGTGAATTAGAATTTTTAGATGGGAATACTATAAGCAG
TGCCCTTAAGAACAGAGCTGTGATTAATGTCTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-168)

RecR protein (RecR_ZnF)

(38-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.513

98.985

0.401
  recR Bacillus subtilis subsp. subtilis str. 168

39.267

96.954

0.381