Detailed information NTG1029812

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: AB6A33_RS17745
• Genome accession: NZ_CP163446
• Coordinates: 3581728..3582873 (+)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain Hao 2023
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3576728..3587873

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB6A33_RS17725 (AB6A33_17725)	-	3577625..3578053 (-)	429	WP_032869448.1	DUF1934 domain-containing protein	-
AB6A33_RS17730 (AB6A33_17730)	-	3578207..3578719 (+)	513	Protein_3431	bacteriocin biosynthesis protein AlbG	-
AB6A33_RS17735 (AB6A33_17735)	-	3578726..3580102 (-)	1377	WP_032875890.1	YncE family protein	-
AB6A33_RS17740 (AB6A33_17740)	-	3580142..3581497 (-)	1356	WP_032875887.1	YncE family protein	-
AB6A33_RS17745 (AB6A33_17745)	rapF	3581728..3582873 (+)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
AB6A33_RS17750 (AB6A33_17750)	-	3582857..3582976 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
AB6A33_RS17755 (AB6A33_17755)	speB	3583099..3583971 (-)	873	WP_032875884.1	agmatinase	-
AB6A33_RS17760 (AB6A33_17760)	speE	3584030..3584860 (-)	831	WP_003151052.1	spermidine synthase	-
AB6A33_RS17765 (AB6A33_17765)	-	3585060..3587132 (+)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
AB6A33_RS17770 (AB6A33_17770)	-	3587157..3587590 (-)	434	Protein_3439	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=1029812 AB6A33_RS17745 WP_074534220.1 3581728..3582873(+) (rapF) [Bacillus velezensis strain Hao 2023]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=1029812 AB6A33_RS17745 WP_074534220.1 3581728..3582873(+) (rapF) [Bacillus velezensis strain Hao 2023]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541