Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   YSS_RS06265 Genome accession   NZ_CP007181
Coordinates   1203614..1204108 (+) Length   164 a.a.
NCBI ID   WP_002825290.1    Uniprot ID   -
Organism   Campylobacter coli RM4661     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1198614..1209108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSS_RS06250 (YSS_06420) - 1199992..1201173 (-) 1182 WP_002825294.1 metal-dependent hydrolase -
  YSS_RS06255 (YSS_06425) - 1201182..1202081 (-) 900 WP_025399098.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  YSS_RS06260 (YSS_06430) gatB 1202081..1203499 (-) 1419 WP_002825291.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  YSS_RS06265 (YSS_06435) luxS 1203614..1204108 (+) 495 WP_002825290.1 S-ribosylhomocysteine lyase Regulator
  YSS_RS06270 (YSS_06440) - 1204424..1205416 (+) 993 WP_025399099.1 isopenicillin N synthase family oxygenase -
  YSS_RS06275 (YSS_06445) - 1205430..1206200 (+) 771 WP_002801060.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  YSS_RS06280 (YSS_06450) metE 1206223..1208487 (+) 2265 WP_025399101.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18217.05 Da        Isoelectric Point: 5.9918

>NTDB_id=102979 YSS_RS06265 WP_002825290.1 1203614..1204108(+) (luxS) [Campylobacter coli RM4661]
MPLLDSFKVDHTKMPAPAVRLAKTMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSDSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEASMKDVLNVSDQNKIPELNIYQCGTCAMHSLNEAKEIAQKVLNSSIGVMNNGELK
LENI

Nucleotide


Download         Length: 495 bp        

>NTDB_id=102979 YSS_RS06265 WP_002825290.1 1203614..1204108(+) (luxS) [Campylobacter coli RM4661]
ATGCCATTACTTGATAGTTTTAAAGTAGATCATACCAAAATGCCAGCACCTGCTGTGCGTTTAGCTAAAACAATGAAGAC
ACCAAAAGGCGATGATATTAGCGTATTTGACTTGCGTTTTTGCATACCCAATAAAGACATCATGAGTGAAAAAGGCACAC
ATACCTTAGAGCACTTATTTGCGGGTTTTATGAGGGATCATCTTAATTCAGATTCGGTTGAAATCATTGATATTTCACCT
ATGGGCTGTCGTACGGGTTTTTATATGAGCTTAATTGGAACACCGGATGAAAAAAGTGTTGCTAAAGCTTGGGAAGCCTC
AATGAAAGATGTTTTAAATGTAAGCGATCAAAACAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGTGCTATGC
ATTCCTTAAATGAAGCAAAAGAAATTGCACAAAAAGTTTTAAATTCTAGTATAGGTGTGATGAATAATGGAGAATTAAAA
CTTGAAAATATTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment