Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   BT141_RS06645 Genome accession   NZ_LT632614
Coordinates   1443840..1444865 (+) Length   341 a.a.
NCBI ID   WP_011213596.1    Uniprot ID   -
Organism   Legionella pneumophila strain ST62 isolate ST62     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1438840..1449865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BT141_RS06615 (H044120014_01305) - 1439271..1439588 (+) 318 WP_011215326.1 DUF2845 domain-containing protein -
  BT141_RS06620 (H044120014_01306) - 1439625..1439996 (+) 372 WP_010947010.1 protease inhibitor I42 family protein -
  BT141_RS06625 (H044120014_01307) - 1440053..1441768 (-) 1716 WP_027220722.1 NAD-dependent malic enzyme -
  BT141_RS06630 (H044120014_01308) - 1441848..1442231 (+) 384 WP_027220721.1 hypothetical protein -
  BT141_RS06635 (H044120014_01309) surE 1442234..1442992 (+) 759 WP_011215330.1 5'/3'-nucleotidase SurE -
  BT141_RS06640 (H044120014_01310) - 1443011..1443754 (+) 744 WP_027220720.1 peptidoglycan DD-metalloendopeptidase family protein -
  BT141_RS06645 (H044120014_01311) rpoS 1443840..1444865 (+) 1026 WP_011213596.1 RNA polymerase sigma factor RpoS Regulator
  BT141_RS06650 (H044120014_01312) hmgA 1444968..1446218 (-) 1251 WP_027220719.1 homogentisate 1,2-dioxygenase -
  BT141_RS06655 (H044120014_01313) - 1446365..1447108 (+) 744 WP_011213598.1 YebC/PmpR family DNA-binding transcriptional regulator -
  BT141_RS06660 (H044120014_01314) ruvC 1447108..1447632 (+) 525 WP_027220718.1 crossover junction endodeoxyribonuclease RuvC -
  BT141_RS06665 (H044120014_01315) ruvA 1447629..1448228 (+) 600 WP_011213600.1 Holliday junction branch migration protein RuvA -
  BT141_RS06670 (H044120014_01316) - 1448278..1448598 (+) 321 WP_027220717.1 hypothetical protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 39433.70 Da        Isoelectric Point: 4.3732

>NTDB_id=1029665 BT141_RS06645 WP_011213596.1 1443840..1444865(+) (rpoS) [Legionella pneumophila strain ST62 isolate ST62]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDIEPDIEKMEEELDELPEFTDDEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=1029665 BT141_RS06645 WP_011213596.1 1443840..1444865(+) (rpoS) [Legionella pneumophila strain ST62 isolate ST62]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAGGATATTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAG
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCTTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTACCTCTTCTGGATCTAATCG
AAGAGGGTAATCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCCTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCAGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCGGAAGAAATAGCAGAAA
TGGTGGATAAACCTTTGGAGGATGTCCAAAAATTATTGGGTTTGAATGATAAAGTCGCTTCGGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAACGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(69-101)

Sigma-70 region 3 (Sigma70_r3)

(187-261)

Sigma-70 region 2 (Sigma70_r2)

(107-176)

Sigma-70, region 4 (Sigma70_r4)

(275-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

67.509

81.232

0.548