Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   YSS_RS02875 Genome accession   NZ_CP007181
Coordinates   570761..571141 (+) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli RM4661     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 565761..576141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSS_RS02855 (YSS_02890) - 565887..567821 (-) 1935 WP_025398808.1 ribonuclease R family protein -
  YSS_RS02860 (YSS_02895) ilvC 567944..568966 (+) 1023 WP_025398809.1 ketol-acid reductoisomerase -
  YSS_RS02865 (YSS_02900) - 568970..570004 (+) 1035 WP_025398810.1 divergent polysaccharide deacetylase family protein -
  YSS_RS02870 (YSS_02905) dprA 569994..570764 (+) 771 WP_002776372.1 DNA-processing protein DprA Machinery gene
  YSS_RS02875 (YSS_02910) dprB 570761..571141 (+) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  YSS_RS02880 (YSS_02915) - 571131..572006 (+) 876 WP_025398811.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  YSS_RS02885 (YSS_02920) msrA 572229..572729 (-) 501 WP_002806713.1 peptide-methionine (S)-S-oxide reductase MsrA -
  YSS_RS02890 (YSS_02925) ppa 572777..573295 (-) 519 WP_002776378.1 inorganic diphosphatase -
  YSS_RS02895 (YSS_02930) - 573306..573881 (-) 576 WP_002781658.1 adenylate kinase -
  YSS_RS02900 (YSS_02935) aspS 573878..575629 (-) 1752 WP_002825344.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=102965 YSS_RS02875 WP_002776373.1 570761..571141(+) (dprB) [Campylobacter coli RM4661]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=102965 YSS_RS02875 WP_002776373.1 570761..571141(+) (dprB) [Campylobacter coli RM4661]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421

Multiple sequence alignment