Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BV310_RS20200 Genome accession   NZ_LT615378
Coordinates   3808402..3809070 (-) Length   222 a.a.
NCBI ID   WP_001350561.1    Uniprot ID   B1X972
Organism   Escherichia coli isolate 103     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3803402..3814070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV310_RS20170 rfaQ 3803575..3804645 (-) 1071 WP_001350560.1 lipopolysaccharide core heptosyltransferase RfaQ -
  BV310_RS20175 waaA 3805051..3806328 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  BV310_RS20180 coaD 3806336..3806815 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  BV310_RS20185 mutM 3806854..3807663 (-) 810 WP_001114543.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  BV310_RS20190 rpmG 3807761..3807928 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  BV310_RS20195 rpmB 3807949..3808185 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  BV310_RS20200 radC 3808402..3809070 (-) 669 WP_001350561.1 DNA repair protein RadC Machinery gene
  BV310_RS20205 coaBC 3809242..3810462 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BV310_RS20210 dut 3810440..3810898 (+) 459 WP_000976073.1 dUTP diphosphatase -
  BV310_RS20215 slmA 3811005..3811601 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  BV310_RS20220 pyrE 3811638..3812279 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  BV310_RS20225 rph 3812345..3813061 (-) 717 WP_001247096.1 ribonuclease PH -
  BV310_RS20235 yicC 3813188..3814051 (+) 864 WP_000621340.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25343.46 Da        Isoelectric Point: 8.4958

>NTDB_id=1029620 BV310_RS20200 WP_001350561.1 3808402..3809070(-) (radC) [Escherichia coli isolate 103]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHRRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=1029620 BV310_RS20200 WP_001350561.1 3808402..3809070(-) (radC) [Escherichia coli isolate 103]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGGCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1X972

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496