Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB5B06_RS24235 Genome accession   NZ_CP163419
Coordinates   4234550..4235911 (-) Length   453 a.a.
NCBI ID   WP_006161974.1    Uniprot ID   H1SD91
Organism   Cupriavidus basilensis strain BL-MT-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4229550..4240911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5B06_RS24215 - 4230598..4232544 (+) 1947 WP_416048801.1 ATP-binding cassette domain-containing protein -
  AB5B06_RS24220 - 4232634..4233119 (-) 486 WP_416048802.1 disulfide bond formation protein B -
  AB5B06_RS24225 - 4233179..4233832 (-) 654 WP_416048803.1 GNAT family N-acetyltransferase -
  AB5B06_RS24230 - 4233858..4234439 (-) 582 WP_416048804.1 hypothetical protein -
  AB5B06_RS24235 radA 4234550..4235911 (-) 1362 WP_006161974.1 DNA repair protein RadA Machinery gene
  AB5B06_RS24240 alr 4236042..4237157 (-) 1116 WP_416048805.1 alanine racemase -
  AB5B06_RS24245 lplT 4237608..4238927 (+) 1320 WP_416048806.1 lysophospholipid transporter LplT -
  AB5B06_RS24250 - 4239067..4240233 (-) 1167 WP_416048807.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48535.89 Da        Isoelectric Point: 7.2045

>NTDB_id=1029611 AB5B06_RS24235 WP_006161974.1 4234550..4235911(-) (radA) [Cupriavidus basilensis strain BL-MT-10]
MAKPKNVYTCTECGGTSPRWQGQCPQCQQWNTLVESVAETPSTKRFQPLAASAMVQRLSEIDAADVPRFSSGIEEFDRVL
GGGLVSGGVVLIGGDPGIGKSTLLLQALANLSAQRRVLYVSGEESGAQIALRAQRLGVDSPHLALLAEIQLEKIQATLEV
EKPEVAVIDSIQTLFSDALTSAPGSVAQVRECAAQLTRIAKSTGTTIILVGHVTKDGSLAGPRVLEHIVDTVLYFEGDTH
SSHRLIRAFKNRFGAVNELGVFAMTERGLRGVSNPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEVQALVDTANVPNPRR
LAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPRGLVVFGEIGLAGEIRP
SPRGQDRLREAAKLGFSIAVIPKANAPKQKIEGLEVIAVERLEQAIDRVRHME

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1029611 AB5B06_RS24235 WP_006161974.1 4234550..4235911(-) (radA) [Cupriavidus basilensis strain BL-MT-10]
TTGGCCAAGCCCAAGAACGTCTATACCTGCACAGAGTGCGGCGGCACCTCGCCGCGCTGGCAAGGCCAGTGCCCGCAGTG
CCAGCAATGGAACACGCTGGTGGAGAGCGTGGCGGAAACCCCTTCGACCAAGCGCTTCCAGCCGCTGGCGGCCTCGGCCA
TGGTGCAGCGCCTGTCGGAGATCGACGCCGCCGACGTGCCGCGCTTTTCCAGCGGCATCGAGGAGTTCGACCGCGTGCTC
GGCGGTGGCCTGGTATCGGGCGGGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCCACCTTGCTGCTGCAAGC
CCTGGCCAACCTGTCCGCGCAGCGCCGCGTGCTGTACGTCAGCGGCGAGGAGTCCGGCGCGCAGATCGCATTGCGGGCGC
AGCGCCTGGGCGTGGACAGCCCGCACCTGGCGCTGCTGGCCGAGATCCAGCTCGAGAAGATCCAGGCCACGCTGGAGGTG
GAAAAGCCCGAGGTCGCGGTGATCGATTCGATCCAGACCTTGTTCTCGGATGCGCTGACCTCGGCGCCAGGTTCGGTCGC
CCAGGTGCGCGAGTGCGCGGCCCAGCTGACCCGGATTGCCAAGAGCACCGGCACCACCATCATCCTGGTCGGCCACGTGA
CCAAGGACGGCAGCCTGGCCGGCCCGCGCGTGCTGGAGCACATCGTCGATACCGTGCTGTATTTCGAGGGCGACACGCAT
TCCTCGCACCGCCTGATCCGTGCTTTCAAGAACCGTTTTGGCGCGGTCAACGAGCTGGGCGTGTTCGCCATGACCGAGCG
CGGCCTGCGCGGGGTCAGCAACCCGTCCGCGCTGTTCCTGTCGCAGCATGAGCAGGTGGTGCCCGGCTCCTGCGTGCTGG
TGACGCAAGAGGGCACGCGGCCGCTGCTGGTGGAGGTGCAGGCGCTGGTCGACACGGCTAACGTGCCGAACCCGCGGCGC
CTGGCGGTGGGTCTGGAGCAGAACCGGCTGGCCATGCTGCTGGCGGTGCTGCACCGCCATGCCGGCATTGCCTGCTTTGA
CCAGGACGTCTTCCTCAACGCCGTGGGCGGGGTCAAGATCACCGAGCCGGCCGCCGACCTGGCGGTGCTGCTGGCCATTC
ACTCCTCCATGCGCAACAAGCCGCTGCCACGCGGCCTGGTGGTGTTTGGCGAAATCGGCCTGGCCGGTGAGATCCGGCCC
AGCCCGCGCGGGCAGGACCGCTTGCGCGAGGCGGCCAAGCTGGGCTTCTCGATCGCGGTAATCCCCAAGGCCAATGCGCC
CAAGCAGAAGATCGAGGGCCTGGAAGTGATTGCGGTGGAGCGGCTGGAGCAGGCGATCGACCGGGTTCGGCATATGGAAT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(60-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H1SD91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.894

99.779

0.488
  radA Streptococcus mitis SK321

46.696

100

0.468
  radA Streptococcus pneumoniae D39

46.593

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.593

100

0.468
  radA Streptococcus pneumoniae R6

46.593

100

0.468
  radA Streptococcus pneumoniae Rx1

46.593

100

0.468
  radA Streptococcus mitis NCTC 12261

46.374

100

0.466

Multiple sequence alignment