Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BV310_RS11295 Genome accession   NZ_LT615378
Coordinates   2079244..2079690 (+) Length   148 a.a.
NCBI ID   WP_000187523.1    Uniprot ID   P76362
Organism   Escherichia coli isolate 103     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2074244..2084690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV310_RS11285 agn43 2074475..2077594 (+) 3120 WP_000820410.1 autotransporter adhesin Ag43 -
  BV310_RS11290 yeeR 2077715..2079247 (+) 1533 WP_001350525.1 protein YeeR -
  BV310_RS11295 radC 2079244..2079690 (+) 447 WP_000187523.1 RadC family protein Machinery gene
  BV310_RS11300 yeeT 2079753..2079974 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  BV310_RS11305 cbeA 2080048..2080416 (+) 369 WP_001285584.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  BV310_RS11310 cbtA 2080505..2080879 (+) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  BV310_RS11315 yeeW 2080876..2081070 (+) 195 WP_000988600.1 DUF5983 family protein -
  BV310_RS25160 - 2081116..2081196 (+) 81 Protein_2034 hypothetical protein -
  BV310_RS11325 - 2081485..2081613 (-) 129 Protein_2035 transposase domain-containing protein -
  BV310_RS11330 - 2081685..2081867 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  BV310_RS11335 tmaR 2081968..2082297 (-) 330 WP_000450409.1 DUF496 family protein -
  BV310_RS11340 yeeA 2082469..2083527 (-) 1059 WP_001200891.1 FUSC family protein -
  BV310_RS11345 sbmC 2083725..2084198 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16556.98 Da        Isoelectric Point: 7.6151

>NTDB_id=1029587 BV310_RS11295 WP_000187523.1 2079244..2079690(+) (radC) [Escherichia coli isolate 103]
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1029587 BV310_RS11295 WP_000187523.1 2079244..2079690(+) (radC) [Escherichia coli isolate 103]
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(28-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P76362

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

76.351

0.419

Multiple sequence alignment