Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB4Y28_RS16625 Genome accession   NZ_CP163387
Coordinates   3358135..3358731 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain TY-30     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3353135..3363731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4Y28_RS16610 (AB4Y28_16610) helD 3353343..3355397 (-) 2055 WP_096812149.1 DNA helicase IV -
  AB4Y28_RS16615 (AB4Y28_16615) - 3355522..3355968 (+) 447 WP_002898425.1 YccF domain-containing protein -
  AB4Y28_RS16620 (AB4Y28_16620) yccS 3355986..3358121 (+) 2136 WP_002898422.1 YccS family putative transporter -
  AB4Y28_RS16625 (AB4Y28_16625) sxy/tfoX 3358135..3358731 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  AB4Y28_RS16630 (AB4Y28_16630) sulA 3359080..3359589 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  AB4Y28_RS16635 (AB4Y28_16635) ompA 3359942..3361012 (+) 1071 WP_002898408.1 porin OmpA -
  AB4Y28_RS16640 (AB4Y28_16640) matP 3361144..3361596 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  AB4Y28_RS16645 (AB4Y28_16645) - 3361782..3363539 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1029512 AB4Y28_RS16625 WP_004179217.1 3358135..3358731(-) (sxy/tfoX) [Klebsiella pneumoniae strain TY-30]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1029512 AB4Y28_RS16625 WP_004179217.1 3358135..3358731(-) (sxy/tfoX) [Klebsiella pneumoniae strain TY-30]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment