Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BV315_RS01335 Genome accession   NZ_LT615377
Coordinates   263648..264124 (-) Length   158 a.a.
NCBI ID   WP_000811693.1    Uniprot ID   A0AA91EE93
Organism   Escherichia coli isolate 106     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 258648..269124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV315_RS01305 proB 259780..260883 (+) 1104 WP_001285288.1 glutamate 5-kinase -
  BV315_RS01310 proA 260895..262148 (+) 1254 WP_000893278.1 glutamate-5-semialdehyde dehydrogenase -
  BV315_RS01320 ykfI 262720..263061 (-) 342 WP_000854672.1 type IV toxin-antitoxin system toxin YkfI -
  BV315_RS01325 yafW 263082..263399 (-) 318 WP_000070395.1 type IV toxin-antitoxin system antitoxin YafW -
  BV315_RS01330 ykfH 263418..263639 (-) 222 WP_000691994.1 DUF987 domain-containing protein -
  BV315_RS01335 radC 263648..264124 (-) 477 WP_000811693.1 RadC family protein Machinery gene
  BV315_RS01340 yafX 264140..264598 (-) 459 WP_000211838.1 antirestriction protein -
  BV315_RS01345 ykfF 264696..264935 (-) 240 WP_000194654.1 DUF905 family protein -
  BV315_RS01350 ykfB 265012..265479 (-) 468 WP_001547765.1 protein YkfB -
  BV315_RS24920 yafY 265502..265945 (-) 444 WP_000824223.1 YfjS/YafY family lipoprotein -
  BV315_RS24925 ypjK 265945..266172 (-) 228 WP_001548158.1 protein YpjK -
  BV315_RS24930 - 266168..266359 (-) 192 Protein_251 DeoR family transcriptional regulator -
  BV315_RS01365 yafZ 266576..267397 (-) 822 WP_000197389.1 DUF932 domain-containing protein -
  BV315_RS01370 ykfA 267489..268352 (-) 864 WP_001065553.1 GTPase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18098.78 Da        Isoelectric Point: 8.7508

>NTDB_id=1029482 BV315_RS01335 WP_000811693.1 263648..264124(-) (radC) [Escherichia coli isolate 106]
MKQLSFLPGEMTPQDRRLIQRALRALDRHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGT
INRTEVHPREVVKRALHFNAAAVILAHNHPSGETTPSQADKTLTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1029482 BV315_RS01335 WP_000811693.1 263648..264124(-) (radC) [Escherichia coli isolate 106]
ATGAAACAGCTTTCCTTTTTACCCGGCGAGATGACGCCACAGGACCGGCGTCTCATTCAGCGGGCGCTCAGGGCTCTGGA
CCGCCACCTGCATGAGCCCGGCGTAGCCTTCACCTCTACCCACGCCGTACGTGAATGGCTGCGACTGCATATGGCCGCGC
TTGAGCGGGAAGAGTTCCGGGTGTTGTATCTGGACAACCAGAATCAGTTGATTGCCCATGAAACGCTCTTCACCGGCACG
ATTAACCGCACCGAGGTGCATCCCCGGGAGGTGGTCAAACGTGCTCTGCACTTCAACGCGGCGGCGGTGATACTCGCGCA
TAACCATCCTTCCGGCGAGACGACACCTAGCCAGGCCGACAAAACCCTCACGCAGCGACTGGTTCAGGTGCTTCAGCTGG
TGGATATCCGTGTCCCTGACCATCTGATTGTCGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA91EE93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38