Detailed information NTG0102948

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: YSU_RS06180
• Genome accession: NZ_CP007179
• Coordinates: 1241058..1243631 (+)
• Length: 857 a.a.
• NCBI ID: WP_002799590.1
• Uniprot ID: -
• Organism: Campylobacter coli RM5611
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1236058..1248631

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
YSU_RS06150 (YSU_06275)	-	1236356..1237468 (-)	1113	WP_025431523.1	SH3 domain-containing protein	-
YSU_RS06155 (YSU_06280)	purQ	1237551..1238195 (-)	645	WP_002776057.1	phosphoribosylformylglycinamidine synthase I	-
YSU_RS06160 (YSU_06285)	purS	1238195..1238440 (-)	246	WP_002776055.1	phosphoribosylformylglycinamidine synthase subunit PurS	-
YSU_RS06165 (YSU_06290)	purC	1238449..1239159 (-)	711	WP_002776052.1	phosphoribosylaminoimidazolesuccinocarboxamide synthase	-
YSU_RS06170 (YSU_06295)	-	1239162..1240499 (-)	1338	WP_025431524.1	S41 family peptidase	-
YSU_RS06175 (YSU_06300)	-	1240642..1240923 (+)	282	WP_002779742.1	metal-sensing transcriptional repressor	-
YSU_RS06180 (YSU_06305)	clpC	1241058..1243631 (+)	2574	WP_002799590.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
YSU_RS06185 (YSU_06310)	-	1243674..1245605 (-)	1932	WP_002799591.1	penicillin-binding protein 1A	-
YSU_RS06190 (YSU_06315)	maf	1245602..1246153 (-)	552	WP_002779739.1	septum formation inhibitor Maf	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 95550.51 Da
• Isoelectric Point: 5.2845

>NTDB_id=102948 YSU_RS06180 WP_002799590.1 1241058..1243631(+) (clpC) [Campylobacter coli RM5611]
MANIQEFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALIVDSSSILNQICNKFNISKEALELEIKSRISNLATSSNVN
RENVRFSNEFINSLESAKGLMSANGDNYLSIDTWLISESEKNPIREILAKFIDIKEFQKELQNLRAGRKIESKTSDETLD
SLNKFGIDLTAKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVEALAQRIIKKDVPKSLQNKKVIA
LDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILFIDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYR
KYFEKDAALQRRFQPVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAIDLIDEAAAE
LKMQIESEPSSLRKARKDIETLEVENEALKMENDEKNQKRLDEIAKELANLKEKQSALNSQFENEKAVFDSISAKKKEID
SLKNEAVFAKNKGEFQKAAELEYGKIPECEKEVANLEEKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQ
KFLEVEKHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKFLFDDEKAMIRFDMSEF
MEKHSVSRLLGAPPGYVGHEEGGELTEAVRRKPYSVLLFDEVEKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILT
SNIASSAIMNLSGKEQEDAVKNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQKSLENKGIKASLSENAAL
LIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADKLNENDEIVIDAKNDEIVIEKA

Nucleotide

• Length: 2574 bp

>NTDB_id=102948 YSU_RS06180 WP_002799590.1 1241058..1243631(+) (clpC) [Campylobacter coli RM5611]
ATGGCAAATATACAAGAATTTTTAACCGACAATATGCTTTCAAACCTTGAAAGTGCAGCGTCTTTGGCGATTCATTCTAA
AAATAATGAAGTTGTCCCTTTACATCTTTTATGGGCTTTAATTGTAGACAGTTCAAGTATTTTAAATCAAATTTGTAATA
AATTTAATATTTCAAAAGAAGCTTTAGAACTTGAAATCAAAAGCAGAATTTCAAATCTTGCAACAAGCTCTAATGTCAAT
CGTGAAAATGTGCGTTTTTCTAATGAATTTATCAATTCCTTAGAAAGTGCTAAAGGACTTATGAGTGCCAATGGTGATAA
TTACTTAAGTATAGATACTTGGCTTATAAGCGAAAGCGAAAAAAATCCTATTAGAGAAATTTTAGCCAAATTTATAGATA
TTAAAGAATTTCAAAAAGAGCTCCAAAATTTAAGAGCAGGACGCAAAATCGAAAGCAAAACAAGTGATGAAACCCTAGAT
AGCTTAAATAAATTTGGTATAGATTTAACCGCAAAAGCAAGTGAAGGAAAGCTTGATCCTGTTATAGGCAGAGAAGAAGA
AATCGAACGCTTAATGCAAATTCTTATACGCAAAACAAAAAACAACCCTATACTTTTAGGTGAACCAGGAGTAGGAAAAA
CAGCGATCGTAGAAGCTTTAGCACAAAGAATTATCAAAAAAGATGTGCCAAAATCTTTACAAAATAAAAAAGTCATAGCT
CTTGATATGAGTGCATTGATCGCAGGAGCAAAATATCGTGGAGAATTTGAAGATAGATTAAAAGCGGTGGTAAATGAGGT
CATTAAAAGTGAAAATATCATACTTTTTATCGATGAAATTCACACCATAGTAGGCGCAGGAGCAAGCGAAGGAAGTATGG
ATGCTGCAAATATTTTAAAGCCGGCACTTGCAAGAGGCGAACTTCACACCATAGGAGCAACCACTCTTAAAGAATATCGT
AAATACTTTGAAAAAGATGCGGCCTTGCAACGCCGTTTTCAACCTGTAAATGTAGGCGAACCTAGCGTAAATGAAGCTTT
AGCAATGCTAAGGGGTATTAAAGAAAAACTTGAAATTCATCACAATGTCACCATCAATGATAGTGCTTTAGTAGCGGCAG
CTAAGCTTTCAAAACGCTATATTGCCGATCGTTTTTTACCCGATAAAGCAATTGATTTAATCGATGAAGCTGCGGCTGAA
CTTAAAATGCAAATTGAAAGCGAACCAAGCTCTTTGAGAAAGGCACGCAAAGACATAGAAACTTTAGAAGTAGAAAATGA
AGCTCTAAAGATGGAAAATGATGAAAAAAATCAAAAAAGACTAGATGAAATTGCCAAAGAACTGGCCAATTTAAAAGAAA
AACAAAGTGCTTTAAATTCACAATTTGAAAATGAAAAAGCAGTTTTTGATAGCATAAGCGCAAAGAAAAAAGAAATCGAT
AGTCTTAAAAACGAAGCTGTTTTTGCAAAAAATAAGGGTGAATTCCAAAAAGCTGCAGAATTAGAATATGGCAAAATTCC
AGAATGCGAAAAAGAAGTGGCAAATTTAGAAGAAAAATGGAAAAAAATGAGCGAAAATGGAGTCTTGCTTAAAAATCAAG
TGGATGAAGATTTGGTTGCTGGAATTTTAAGCAAATGGACAGGAATTAGCGTGCAAAAAATGCTGACTTCAGAGAAGCAA
AAATTTTTGGAAGTAGAAAAACACTTAAAAGAAAGTGTGATTGGGCAAGATAAGGCTCTAAGCGCTTTAGCAAGAGCTAT
CAAACGCAATAAAGCAGGATTAAATGCAGACAATAAGCCTATAGGAAGCTTTTTATTTTTAGGGCCTACAGGAGTAGGAA
AAACACAATCTGCTAAGGCTTTGGCGAAATTTTTATTTGATGATGAAAAAGCAATGATTCGCTTTGATATGAGTGAATTT
ATGGAAAAACATAGCGTTTCAAGACTCTTAGGAGCGCCTCCAGGTTATGTAGGGCATGAAGAAGGCGGAGAGCTTACTGA
AGCGGTGCGTAGAAAACCTTATAGCGTGCTTTTATTTGATGAAGTCGAAAAAGCCCACAAGGATGTGTTTAATGTACTTT
TAGGAATTTTAGACGATGGTAGGGCAACTGATAGCAAGGGTGTAACTGTGGATTTTAAAAATACCATTATTATTTTAACT
TCTAATATCGCCTCAAGTGCTATCATGAATTTAAGCGGAAAAGAACAAGAAGATGCGGTAAAAAATGAGTTAAAAAATTT
CTTTAAACCTGAATTTTTAAACCGCTTAGACGATATCATCACCTTTAATCCACTTGGAAAAGATGAGGCATATGAGATAG
TTAAACTTTTATTTAAAGACTTGCAAAAAAGTTTGGAAAATAAGGGTATAAAAGCAAGTCTTAGTGAAAATGCTGCGCTT
TTAATCGCTAAGGACGGATTTGATCCTGACTTTGGTGCTAGACCTTTAAGAAGGGCTATTTATGATTTAATCGAAGACAA
GCTAAGCGATATGATACTTGCAGACAAGCTTAATGAAAATGATGAGATTGTTATCGATGCAAAAAATGATGAGATTGTTA
TCGAAAAAGCTTAA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (19-70)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-145)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (765-845)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-316)

• AAA lid domain (AAA_lid_9) (342-444)

• AAA domain (Cdc48 subfamily) (AAA_2) (599-759)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	43.494	99.533	0.433
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.466	100	0.422