Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   YSU_RS05670 Genome accession   NZ_CP007179
Coordinates   1133741..1134121 (-) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli RM5611     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1128741..1139121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSU_RS05645 (YSU_05755) aspS 1129254..1131005 (+) 1752 WP_002784258.1 aspartate--tRNA ligase -
  YSU_RS05650 (YSU_05760) - 1131002..1131577 (+) 576 WP_002776379.1 adenylate kinase -
  YSU_RS05655 (YSU_05765) ppa 1131587..1132105 (+) 519 WP_002799870.1 inorganic diphosphatase -
  YSU_RS05660 (YSU_05770) msrA 1132153..1132653 (+) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  YSU_RS05665 (YSU_05775) - 1132876..1133730 (-) 855 WP_370300696.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  YSU_RS05670 (YSU_05780) dprB 1133741..1134121 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  YSU_RS05675 (YSU_05785) dprA 1134118..1134888 (-) 771 WP_002776372.1 DNA-processing protein DprA Machinery gene
  YSU_RS05680 (YSU_05790) - 1134878..1135930 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  YSU_RS05685 (YSU_05795) ilvC 1135933..1136955 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  YSU_RS05690 (YSU_05800) - 1137078..1139012 (+) 1935 WP_002776352.1 RNB domain-containing ribonuclease -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=102944 YSU_RS05670 WP_002776373.1 1133741..1134121(-) (dprB) [Campylobacter coli RM5611]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=102944 YSU_RS05670 WP_002776373.1 1133741..1134121(-) (dprB) [Campylobacter coli RM5611]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421

Multiple sequence alignment