Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   AB4X21_RS04315 Genome accession   NZ_CP163380
Coordinates   828305..829144 (+) Length   279 a.a.
NCBI ID   WP_369088249.1    Uniprot ID   A0AB39LFL2
Organism   Streptococcus sp. CP1998     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 823305..834144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4X21_RS04285 (AB4X21_04285) - 823560..824441 (+) 882 WP_003011829.1 F0F1 ATP synthase subunit gamma -
  AB4X21_RS04290 (AB4X21_04290) atpD 824527..825933 (+) 1407 WP_003011794.1 F0F1 ATP synthase subunit beta -
  AB4X21_RS04295 (AB4X21_04295) - 825947..826366 (+) 420 WP_003012328.1 F0F1 ATP synthase subunit epsilon -
  AB4X21_RS04300 (AB4X21_04300) - 826463..826693 (+) 231 WP_003011760.1 DUF1146 family protein -
  AB4X21_RS04305 (AB4X21_04305) murA 826760..828043 (+) 1284 WP_369088247.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  AB4X21_RS04310 (AB4X21_04310) - 828033..828221 (+) 189 WP_369088248.1 DNA-directed RNA polymerase subunit beta -
  AB4X21_RS04315 (AB4X21_04315) endA 828305..829144 (+) 840 WP_369088249.1 DNA/RNA non-specific endonuclease Machinery gene
  AB4X21_RS04320 (AB4X21_04320) - 829226..829948 (+) 723 WP_369088250.1 M57 family metalloprotease -
  AB4X21_RS04325 (AB4X21_04325) - 830052..831954 (+) 1903 Protein_801 ABC-F family ATP-binding cassette domain-containing protein -
  AB4X21_RS04330 (AB4X21_04330) - 831955..832830 (+) 876 WP_369088251.1 XRE/MutR family transcriptional regulator -
  AB4X21_RS04335 (AB4X21_04335) - 832852..834033 (+) 1182 WP_369088252.1 MFS transporter -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30464.96 Da        Isoelectric Point: 9.4817

>NTDB_id=1029431 AB4X21_RS04315 WP_369088249.1 828305..829144(+) (endA) [Streptococcus sp. CP1998]
MTKQVLTKRTKQTLAGFVVATALAIGGYYFNQPTVKEATDQVVSVVTSSQQETPSKELASSVLTKSARSQLGNDLEWNGA
GAFVVKGNRTDLDASVASQPYADNKTKEVNGKTVPTVANAIMTKATRQYRDRDATGSGLTDWKPAGWHQVHNLSGEYDHA
VDRGHLLGYALIGNLKGFDASTSNPKNIAVQTSWSNQANDPHSTGQNYYETLVRKALDKNKRIRYRVTLIYNQPEDLIPL
GSQIEAKSSDGTLEFNVFVPNVQSGISLDYQTGKVTVHQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=1029431 AB4X21_RS04315 WP_369088249.1 828305..829144(+) (endA) [Streptococcus sp. CP1998]
ATGACAAAACAAGTACTAACGAAACGAACCAAACAAACCCTAGCAGGTTTTGTGGTGGCAACGGCCCTAGCTATCGGGGG
CTATTATTTTAATCAACCGACGGTAAAAGAAGCGACAGATCAGGTTGTTTCGGTGGTGACGAGTAGCCAACAAGAAACAC
CTAGTAAAGAGTTAGCCAGCTCGGTACTAACGAAATCTGCCCGTTCGCAATTGGGGAATGACTTGGAATGGAATGGCGCT
GGAGCCTTTGTAGTTAAGGGGAATCGCACAGATCTGGATGCCAGTGTGGCTAGTCAACCCTATGCGGATAACAAGACAAA
AGAAGTCAATGGAAAGACCGTGCCGACGGTTGCGAACGCTATTATGACCAAGGCGACTCGCCAGTACAGAGATCGAGATG
CAACAGGTAGTGGCCTAACCGATTGGAAACCAGCAGGTTGGCATCAGGTCCACAATCTGTCCGGTGAGTATGACCATGCT
GTGGATCGGGGCCATTTATTGGGCTACGCCTTGATCGGCAATCTCAAAGGTTTCGATGCTTCGACTAGCAATCCCAAAAA
TATCGCCGTTCAGACATCGTGGTCCAATCAAGCCAATGATCCTCATTCCACTGGCCAAAACTACTACGAGACCCTGGTTC
GAAAAGCACTGGATAAGAACAAGCGGATCCGCTATCGGGTGACCTTGATCTACAATCAGCCAGAAGATTTGATCCCATTA
GGTTCTCAGATTGAAGCCAAATCGAGTGACGGGACGCTTGAATTCAATGTTTTTGTTCCTAATGTTCAAAGTGGGATTAG
CCTGGATTACCAGACAGGCAAAGTAACCGTCCATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

63.406

98.925

0.627
  endA Streptococcus pneumoniae D39

63.406

98.925

0.627
  endA Streptococcus pneumoniae R6

63.406

98.925

0.627
  endA Streptococcus pneumoniae TIGR4

63.406

98.925

0.627

Multiple sequence alignment