Detailed information
Bioinformatically predicted
Overview
| Name | HI0659 | Type | Machinery gene |
| Locus tag | AB4X21_RS03660 | Genome accession | NZ_CP163380 |
| Coordinates | 692231..692524 (+) | Length | 97 a.a. |
| NCBI ID | WP_021144391.1 | Uniprot ID | - |
| Organism | Streptococcus sp. CP1998 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 683065..695353 | 692231..692524 | within | 0 |
Gene organization within MGE regions
Location: 683065..695353
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB4X21_RS03625 (AB4X21_03625) | - | 683065..683430 (+) | 366 | WP_369088192.1 | TIGR02328 family protein | - |
| AB4X21_RS03630 (AB4X21_03630) | - | 683557..686546 (+) | 2990 | Protein_662 | type I restriction endonuclease subunit R | - |
| AB4X21_RS03635 (AB4X21_03635) | - | 686559..687374 (+) | 816 | WP_369088193.1 | hypothetical protein | - |
| AB4X21_RS03640 (AB4X21_03640) | - | 687368..688582 (+) | 1215 | WP_369088194.1 | helix-turn-helix domain-containing protein | - |
| AB4X21_RS03645 (AB4X21_03645) | - | 688566..689777 (+) | 1212 | WP_369088195.1 | restriction endonuclease subunit S | - |
| AB4X21_RS03650 (AB4X21_03650) | - | 689787..691640 (+) | 1854 | WP_369088196.1 | AAA family ATPase | - |
| AB4X21_RS03655 (AB4X21_03655) | - | 691933..692241 (+) | 309 | WP_369088197.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| AB4X21_RS03660 (AB4X21_03660) | HI0659 | 692231..692524 (+) | 294 | WP_021144391.1 | helix-turn-helix domain-containing protein | Machinery gene |
| AB4X21_RS03665 (AB4X21_03665) | - | 692546..694147 (+) | 1602 | WP_369088198.1 | type I restriction-modification system subunit M | - |
| AB4X21_RS03670 (AB4X21_03670) | - | 694263..695126 (+) | 864 | Protein_670 | Rpn family recombination-promoting nuclease/putative transposase | - |
| AB4X21_RS03675 (AB4X21_03675) | - | 695129..695353 (+) | 225 | Protein_671 | hypothetical protein | - |
Sequence
Protein
Download Length: 97 a.a. Molecular weight: 10730.48 Da Isoelectric Point: 5.8962
>NTDB_id=1029423 AB4X21_RS03660 WP_021144391.1 692231..692524(+) (HI0659) [Streptococcus sp. CP1998]
MKNSAIGSNWKDVRAELFTKEEILESDLRVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKV
MKNSAIGSNWKDVRAELFTKEEILESDLRVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKV
Nucleotide
Download Length: 294 bp
>NTDB_id=1029423 AB4X21_RS03660 WP_021144391.1 692231..692524(+) (HI0659) [Streptococcus sp. CP1998]
ATGAAGAATAGTGCCATCGGCAGCAATTGGAAAGATGTGAGAGCAGAGCTCTTCACCAAGGAAGAAATCCTGGAAAGCGA
TTTGCGGGTCGCGATTATGACTGAGCTGATCGAGGCTCGGCATGAAAAGGGCATTAGCCAAAAGAAACTAGAAGAACTCA
GTGGGGTCAGTCAACCGGTCATCGCTCGGATGGAGACAGGAAAGACCAGTCCTCAATTGGACACGGTCTTGAAAGTCTTA
GCCAGTCTGGGCAAGACCCTCGCTGTCGTTCCACTGGAACAAGAAAAGGTCTAA
ATGAAGAATAGTGCCATCGGCAGCAATTGGAAAGATGTGAGAGCAGAGCTCTTCACCAAGGAAGAAATCCTGGAAAGCGA
TTTGCGGGTCGCGATTATGACTGAGCTGATCGAGGCTCGGCATGAAAAGGGCATTAGCCAAAAGAAACTAGAAGAACTCA
GTGGGGTCAGTCAACCGGTCATCGCTCGGATGGAGACAGGAAAGACCAGTCCTCAATTGGACACGGTCTTGAAAGTCTTA
GCCAGTCTGGGCAAGACCCTCGCTGTCGTTCCACTGGAACAAGAAAAGGTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| HI0659 | Haemophilus influenzae Rd KW20 |
60.44 |
93.814 |
0.567 |