Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PHAGEPCYII10_RS09485 Genome accession   NZ_LT608330
Coordinates   2043789..2044118 (+) Length   109 a.a.
NCBI ID   WP_003138486.1    Uniprot ID   A0A0H2ZDM5
Organism   Pseudomonas aeruginosa isolate PA14Or_reads     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2038789..2049118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHAGEPCYII10_RS09470 - 2039187..2040140 (+) 954 WP_003138480.1 UDP-glucose 4-epimerase family protein -
  PHAGEPCYII10_RS09475 - 2040140..2041156 (+) 1017 WP_003138482.1 MraY family glycosyltransferase -
  PHAGEPCYII10_RS09480 - 2041601..2043598 (+) 1998 WP_003138484.1 polysaccharide biosynthesis protein -
  PHAGEPCYII10_RS09485 (PA14OR_1899) comEA/comE1 2043789..2044118 (+) 330 WP_003138486.1 ComEA family DNA-binding protein Machinery gene
  PHAGEPCYII10_RS09495 - 2044335..2045531 (-) 1197 WP_003110849.1 amino acid aminotransferase -
  PHAGEPCYII10_RS09500 uvrB 2045719..2047731 (+) 2013 WP_003138489.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11383.31 Da        Isoelectric Point: 8.0459

>NTDB_id=1029316 PHAGEPCYII10_RS09485 WP_003138486.1 2043789..2044118(+) (comEA/comE1) [Pseudomonas aeruginosa isolate PA14Or_reads]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=1029316 PHAGEPCYII10_RS09485 WP_003138486.1 2043789..2044118(+) (comEA/comE1) [Pseudomonas aeruginosa isolate PA14Or_reads]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385