Detailed information NTG1029311

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PHAGEPCYII10_RS07010
• Genome accession: NZ_LT608330
• Coordinates: 1499089..1500093 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa isolate PA14Or_reads
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1494089..1505093

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PHAGEPCYII10_RS06980 (PA14OR_1399)	fghA	1494181..1495032 (+)	852	WP_003138034.1	S-formylglutathione hydrolase	-
PHAGEPCYII10_RS06985	ispF	1495103..1495576 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PHAGEPCYII10_RS06990 (PA14OR_1401)	truD	1495573..1496640 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
PHAGEPCYII10_RS06995	surE	1496628..1497377 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PHAGEPCYII10_RS07000	-	1497410..1498045 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PHAGEPCYII10_RS07005	-	1498091..1498984 (+)	894	WP_003138035.1	peptidoglycan DD-metalloendopeptidase family protein	-
PHAGEPCYII10_RS07010	rpoS	1499089..1500093 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PHAGEPCYII10_RS07015	fdxA	1500519..1500842 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PHAGEPCYII10_RS07020	mutS	1500909..1503476 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
PHAGEPCYII10_RS07025 (PA14OR_1408)	-	1503602..1504609 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=1029311 PHAGEPCYII10_RS07010 WP_003113871.1 1499089..1500093(+) (rpoS) [Pseudomonas aeruginosa isolate PA14Or_reads]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=1029311 PHAGEPCYII10_RS07010 WP_003113871.1 1499089..1500093(+) (rpoS) [Pseudomonas aeruginosa isolate PA14Or_reads]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653