Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   B5474_RS08800 Genome accession   NZ_LT605059
Coordinates   1834195..1834830 (+) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain NCTC7364     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1829195..1839830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5474_RS08775 (NCTC7364_01759) - 1830035..1831048 (+) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -
  B5474_RS08780 (NCTC7364_01760) murU 1831048..1831737 (+) 690 WP_000646466.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  B5474_RS08785 (NCTC7364_01761) rsmG 1831825..1832457 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  B5474_RS08790 (NCTC7364_01762) - 1832479..1833261 (+) 783 WP_000057212.1 ParA family protein -
  B5474_RS08795 (NCTC7364_01763) - 1833258..1834145 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  B5474_RS08800 (NCTC7364_01764) exbB 1834195..1834830 (+) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  B5474_RS08805 (NCTC7364_01765) - 1834846..1835274 (+) 429 WP_000669686.1 ExbD/TolR family protein -
  B5474_RS08810 (NCTC7364_01766) msbA 1835271..1836998 (+) 1728 WP_001070725.1 lipid A export permease/ATP-binding protein MsbA -
  B5474_RS08815 (NCTC7364_01767) lpxK 1837001..1838011 (+) 1011 WP_079548509.1 tetraacyldisaccharide 4'-kinase -
  B5474_RS08820 (NCTC7364_01768) kdsB 1838021..1838782 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  B5474_RS08825 (NCTC7364_01769) - 1838794..1839774 (+) 981 WP_038346636.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=1029249 B5474_RS08800 WP_000264037.1 1834195..1834830(+) (exbB) [Acinetobacter baumannii strain NCTC7364]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1029249 B5474_RS08800 WP_000264037.1 1834195..1834830(+) (exbB) [Acinetobacter baumannii strain NCTC7364]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCACCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTGATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393