Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NST61_RS06885 Genome accession   NZ_CP163266
Coordinates   1396918..1398735 (+) Length   605 a.a.
NCBI ID   WP_368976184.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL K6-2771     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1391918..1403735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST61_RS06860 (NST61_06860) sspO 1392112..1392273 (+) 162 WP_034769119.1 small acid-soluble spore protein O -
  NST61_RS06865 (NST61_06865) trpS 1392328..1393314 (-) 987 WP_368976180.1 tryptophan--tRNA ligase -
  NST61_RS06870 (NST61_06870) spxA 1394042..1394437 (+) 396 WP_034769143.1 transcriptional regulator SpxA -
  NST61_RS06875 (NST61_06875) mecA 1394786..1395451 (+) 666 WP_095142208.1 adaptor protein MecA -
  NST61_RS06880 (NST61_06880) - 1395620..1396816 (+) 1197 WP_368976183.1 competence protein CoiA -
  NST61_RS06885 (NST61_06885) pepF 1396918..1398735 (+) 1818 WP_368976184.1 oligoendopeptidase F Regulator
  NST61_RS06890 (NST61_06890) - 1399613..1400482 (-) 870 WP_244910508.1 ClpXP adapter SpxH family protein -
  NST61_RS06895 (NST61_06895) - 1400479..1400889 (-) 411 WP_034769151.1 globin -
  NST61_RS06900 (NST61_06900) - 1401141..1401752 (-) 612 WP_108897804.1 lytic transglycosylase domain-containing protein -
  NST61_RS06905 (NST61_06905) - 1401775..1402359 (-) 585 WP_368976187.1 CYTH domain-containing protein -
  NST61_RS06910 (NST61_06910) - 1402716..1403342 (+) 627 WP_041847579.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69945.89 Da        Isoelectric Point: 4.8688

>NTDB_id=1029181 NST61_RS06885 WP_368976184.1 1396918..1398735(+) (pepF) [Caldifermentibacillus hisashii strain FSL K6-2771]
MSTEKAVKKLPARNEIPVKDTWALENIFATDEKWKEEFEQIKAIIPKAFEFQGKLGENADVLYEALQYQDEVMMRLGKLY
TYAHMRYDQDTTNSFYQGMNDQARNLYTQAASAFSFVVPELLAIDENKIRQFLTEKEELKLYEHALEEINLQRPHVLSPE
VEAILAQSAEVTDAPSNTFGMLNNADLEFPSIVDENGEEVEITHGRYIRFLESADRRVRKDAFHALYETYGKFRNTFAST
LSGQVKRNNFYANVRKYKSAREAALSANNIPESVYDNLVETINKNLPLLHRYVALRKKVLGLDELHMYDLYTPLVKDVKM
EVTFEEAKDIVLKGLAPMGEEYLSVLKEGFANRWVDVHENKGKRSGAYSSGAYGTDPYILLNWQDNVNNLFTLAHEFGHS
VHSYYTRKYQPFPYGDYSIFVAEVASTCNENLLSEYLLKTLDDDRKRLYILNNYLETFRGTVFRQTMFAEFEHDIHIRSQ
KGEALTAELLTNIYYDLNKKYFGDDVVIDEEIGLEWARIPHFYYNYYVYQYATGLSASTALSKQILEEGEPAVERYIGYL
KSGSSDYPIEVLKKAGVDMTTAEPIENACKVFEEKLTEMERLLNK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1029181 NST61_RS06885 WP_368976184.1 1396918..1398735(+) (pepF) [Caldifermentibacillus hisashii strain FSL K6-2771]
ATGTCAACAGAAAAAGCAGTAAAAAAACTGCCGGCAAGAAATGAAATCCCGGTAAAGGATACATGGGCACTGGAAAATAT
TTTTGCAACAGACGAAAAATGGAAAGAGGAGTTTGAGCAGATTAAAGCGATAATTCCTAAAGCTTTTGAATTTCAAGGGA
AACTTGGTGAAAATGCTGACGTTTTATATGAAGCATTGCAATATCAAGATGAAGTGATGATGCGACTGGGGAAATTGTAT
ACATATGCCCATATGCGATATGATCAGGATACGACAAATTCTTTCTATCAAGGAATGAATGATCAAGCGAGAAATTTGTA
TACTCAGGCAGCAAGTGCTTTTTCCTTCGTTGTCCCCGAATTACTGGCGATTGATGAGAATAAAATCCGGCAGTTTTTAA
CCGAAAAAGAAGAATTAAAGTTATATGAGCATGCTTTGGAAGAAATTAATTTGCAACGTCCGCATGTATTGTCACCTGAA
GTAGAAGCGATTTTAGCCCAAAGTGCAGAGGTGACGGATGCGCCGAGTAATACATTCGGCATGCTAAATAACGCAGACTT
GGAGTTTCCGTCCATTGTGGATGAAAACGGAGAAGAAGTCGAAATAACGCACGGCCGTTATATTCGCTTTTTAGAAAGTG
CGGATCGCCGTGTGCGAAAAGATGCGTTTCATGCTTTATATGAAACATATGGGAAATTTCGAAATACGTTTGCGAGTACA
CTAAGCGGACAAGTAAAACGCAATAATTTTTATGCTAATGTCCGTAAATACAAATCGGCACGGGAAGCCGCACTATCCGC
CAACAATATTCCGGAGTCGGTATATGATAATTTAGTGGAAACAATCAATAAAAACTTGCCGCTTCTACACCGTTATGTCG
CATTACGGAAAAAGGTGCTTGGACTTGATGAATTGCATATGTATGATTTGTATACACCGCTTGTTAAAGATGTCAAAATG
GAAGTGACCTTTGAAGAGGCAAAAGATATCGTCTTAAAAGGATTGGCTCCAATGGGGGAAGAATATCTTTCCGTTTTAAA
AGAAGGGTTTGCCAATCGCTGGGTAGATGTCCATGAAAATAAAGGAAAAAGAAGCGGGGCTTACTCATCCGGAGCGTATG
GAACCGATCCGTATATATTGTTAAACTGGCAAGACAATGTCAATAATTTGTTTACCCTTGCCCATGAATTTGGTCATTCG
GTACATAGTTACTATACAAGGAAATACCAACCATTTCCTTATGGCGATTATTCGATTTTTGTTGCCGAAGTTGCCTCCAC
TTGTAATGAAAATTTATTAAGTGAGTATTTGTTAAAAACATTGGACGATGATAGAAAACGGCTGTACATTTTGAATAATT
ATTTGGAAACATTCCGTGGCACGGTATTCCGGCAGACCATGTTTGCTGAATTTGAACATGATATTCACATTCGTTCCCAA
AAAGGGGAAGCATTGACGGCAGAGTTATTGACAAATATTTATTATGATTTGAATAAAAAATATTTTGGTGATGATGTTGT
TATTGACGAGGAAATTGGCTTAGAATGGGCGAGAATTCCGCATTTCTACTACAACTATTATGTTTACCAATATGCAACGG
GCTTAAGTGCATCAACGGCATTGAGTAAACAAATTTTAGAAGAAGGAGAGCCTGCCGTAGAACGATATATCGGTTATTTG
AAATCCGGAAGCTCGGATTATCCAATCGAAGTGTTGAAAAAAGCAGGGGTGGATATGACAACGGCGGAACCAATCGAAAA
TGCCTGCAAAGTTTTTGAAGAGAAATTGACTGAAATGGAACGACTTTTAAATAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-589)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.433

98.017

0.504

Multiple sequence alignment