Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NST61_RS06360 Genome accession   NZ_CP163266
Coordinates   1287625..1288572 (+) Length   315 a.a.
NCBI ID   WP_368976094.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL K6-2771     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1282625..1293572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST61_RS06345 (NST61_06345) argS 1283237..1284943 (+) 1707 WP_328167526.1 arginine--tRNA ligase -
  NST61_RS06350 (NST61_06350) - 1285159..1286193 (-) 1035 WP_041845982.1 NADH:flavin oxidoreductase/NADH oxidase -
  NST61_RS06355 (NST61_06355) - 1286568..1287308 (+) 741 WP_368976093.1 EAL domain-containing protein -
  NST61_RS06360 (NST61_06360) ceuB 1287625..1288572 (+) 948 WP_368976094.1 ABC transporter permease Machinery gene
  NST61_RS06365 (NST61_06365) - 1288569..1289519 (+) 951 WP_034768950.1 iron chelate uptake ABC transporter family permease subunit -
  NST61_RS06370 (NST61_06370) - 1289513..1290271 (+) 759 WP_034768951.1 ABC transporter ATP-binding protein -
  NST61_RS06375 (NST61_06375) - 1290471..1291436 (+) 966 WP_095141397.1 siderophore ABC transporter substrate-binding protein -
  NST61_RS06380 (NST61_06380) - 1291705..1292766 (+) 1062 WP_041845985.1 C45 family peptidase -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34524.67 Da        Isoelectric Point: 9.9927

>NTDB_id=1029176 NST61_RS06360 WP_368976094.1 1287625..1288572(+) (ceuB) [Caldifermentibacillus hisashii strain FSL K6-2771]
MKKRYLLLVLIILSLISLFIGVSDISVMDIFHLTDKQWQILVVSRIPRLISIIVSGASLSIAGLIMQSLSRNKFVSPTTA
GTMDFARLGILVAMIVFAGAGSLSKMFVAFVFALAGTFLFMKILERIKFKDAIFIPLVGLMLGNIVSSIATFFAYQNDLI
QNISSWLIGDFSIILKGNYELIFISVPLLFIAYLYANKFTIAGMGEDFSKGLGLNYRQVVNLGLIIVALITSSVVLTVGV
IPFLGLIIPNVVSIYQGDHLKNSLAPTAILGAIFVLFCDILGRVIIYPYEIPINLTVGVIGSAIFIYLLLRRQAQ

Nucleotide


Download         Length: 948 bp        

>NTDB_id=1029176 NST61_RS06360 WP_368976094.1 1287625..1288572(+) (ceuB) [Caldifermentibacillus hisashii strain FSL K6-2771]
ATGAAGAAGAGATACCTACTCCTAGTACTGATTATCCTTTCACTTATATCCCTCTTTATCGGGGTATCAGATATTTCAGT
GATGGATATCTTTCATTTAACAGATAAACAATGGCAAATATTAGTAGTCAGTAGAATTCCAAGGCTAATCAGTATTATTG
TCTCGGGGGCATCGCTGAGTATTGCCGGGCTGATTATGCAAAGCTTAAGTCGAAATAAATTCGTCTCACCAACAACAGCG
GGTACGATGGATTTTGCCCGACTGGGAATTCTCGTTGCTATGATTGTTTTTGCCGGTGCCGGTTCACTTAGCAAAATGTT
TGTTGCTTTTGTATTCGCTTTAGCAGGGACCTTCCTGTTTATGAAAATCTTAGAAAGAATTAAATTTAAGGATGCGATAT
TTATCCCGCTTGTCGGGTTAATGCTAGGAAATATTGTCAGTTCAATTGCAACATTTTTTGCCTATCAAAATGATTTAATT
CAAAATATCTCATCATGGTTAATTGGTGATTTTTCCATCATTTTAAAAGGAAATTATGAATTAATTTTTATTAGTGTGCC
ACTCTTGTTTATTGCGTATCTTTATGCCAACAAATTTACAATTGCCGGAATGGGGGAGGATTTTTCAAAAGGTCTTGGTT
TAAACTACCGTCAAGTAGTTAATCTCGGTTTAATCATCGTTGCTCTTATTACATCATCGGTTGTCTTAACCGTTGGGGTA
ATCCCATTTTTGGGCCTTATTATTCCAAATGTTGTTTCGATTTATCAAGGCGATCATTTGAAGAATAGTTTAGCCCCAAC
AGCAATTCTTGGTGCCATTTTTGTTCTGTTTTGCGATATTCTCGGTCGAGTGATTATTTATCCGTATGAAATTCCAATCA
ATTTGACAGTAGGTGTTATTGGCAGTGCAATTTTTATTTACTTATTATTGAGGAGACAGGCACAATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.341

98.73

0.537

Multiple sequence alignment