Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NSQ86_RS06330 Genome accession   NZ_CP163265
Coordinates   1283177..1284994 (+) Length   605 a.a.
NCBI ID   WP_368997483.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL M8-0368     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1278177..1289994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ86_RS06305 sspO 1278369..1278530 (+) 162 WP_034769119.1 small acid-soluble spore protein O -
  NSQ86_RS06310 trpS 1278585..1279571 (-) 987 WP_368997479.1 tryptophan--tRNA ligase -
  NSQ86_RS06315 spxA 1280301..1280696 (+) 396 WP_034769143.1 transcriptional regulator SpxA -
  NSQ86_RS06320 mecA 1281045..1281710 (+) 666 WP_041846033.1 adaptor protein MecA -
  NSQ86_RS06325 - 1281879..1283075 (+) 1197 WP_368997481.1 competence protein CoiA -
  NSQ86_RS06330 pepF 1283177..1284994 (+) 1818 WP_368997483.1 oligoendopeptidase F Regulator
  NSQ86_RS06335 - 1285985..1286938 (-) 954 WP_368997485.1 ClpXP adapter SpxH family protein -
  NSQ86_RS06340 - 1286935..1287345 (-) 411 WP_034769151.1 globin -
  NSQ86_RS06345 - 1287595..1288206 (-) 612 WP_368997487.1 lytic transglycosylase domain-containing protein -
  NSQ86_RS06350 - 1288229..1288813 (-) 585 WP_034769155.1 CYTH domain-containing protein -
  NSQ86_RS06355 - 1289165..1289791 (+) 627 WP_095142212.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70002.00 Da        Isoelectric Point: 4.9475

>NTDB_id=1029136 NSQ86_RS06330 WP_368997483.1 1283177..1284994(+) (pepF) [Caldifermentibacillus hisashii strain FSL M8-0368]
MSTEKAVKKLPARNEIPVKDTWALENIFATDEKWKEEFERIKAIIPKAFEFQGKLGENADVLYEALQYQDEVMMRLGKLY
TYAHMRYDQDTTNSFYQGMNDQARNLYTQAASAFSFVVPELLAIDENKIRQFLTEKEELKLYEHALEEINLQRPHVLSPE
VEAILAQSTEVTDAPSNTFGMLNNADLEFPSIVDENGEEVEITHGRYIRFLESADRRVRKDAFHALYVTYGKFRNTFAST
LSGQVKRNNFYANVRKYKSAREAALSANNIPESVYDNLVETINKNLPLLHRYVALRKKVLGLDELHMYDLYTPLVKDVKM
EVTFEEAKDIVLKGLAPMGEEYLSVLKEGFANRWVDVHENKGKRSGAYSSGAYGTDPYILLNWQDNVNNLFTLAHEFGHS
VHSYYTRKYQPFPYGDYSIFVAEVASTCNENLLSEYLLKTLDDDRKRLYILNNYLETFRGTVFRQTMFAEFEHDIHIRSQ
KGEALTAELLTNIYYDLNKKYFGDDVVIDEEIGLEWARIPHFYYNYYVYQYATGLSASTALSKQILEEGEPAVERYIGYL
KSGSSDYPIEVLKKAGVDMTTAEPIENACKVFEEKLTEMERLLNR

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1029136 NSQ86_RS06330 WP_368997483.1 1283177..1284994(+) (pepF) [Caldifermentibacillus hisashii strain FSL M8-0368]
ATGTCAACAGAAAAAGCAGTAAAAAAACTGCCGGCAAGAAATGAAATCCCGGTAAAGGATACATGGGCACTGGAAAATAT
TTTTGCAACAGACGAAAAATGGAAAGAGGAGTTTGAGCGGATTAAAGCGATAATTCCTAAAGCTTTTGAATTTCAAGGGA
AACTTGGTGAAAATGCTGACGTTTTATATGAAGCATTGCAATATCAAGATGAAGTGATGATGCGACTGGGGAAATTGTAT
ACATATGCCCATATGCGATATGATCAGGATACGACAAATTCTTTCTATCAAGGAATGAATGATCAAGCGAGAAATTTGTA
TACTCAGGCAGCAAGTGCTTTTTCCTTCGTTGTCCCCGAATTACTGGCGATTGATGAGAATAAAATTCGACAGTTTTTAA
CCGAAAAAGAAGAATTAAAGTTATATGAGCATGCTTTGGAAGAAATTAATTTGCAACGTCCGCATGTATTGTCACCTGAA
GTAGAAGCGATTTTAGCCCAAAGTACAGAAGTGACGGATGCGCCGAGTAATACATTCGGCATGCTAAATAACGCAGACTT
GGAGTTTCCATCTATTGTGGATGAAAACGGAGAAGAAGTCGAAATAACGCACGGCCGTTACATTCGCTTTTTAGAAAGTG
CGGATCGCCGTGTGCGAAAAGATGCGTTTCATGCTTTATATGTAACGTATGGGAAATTTCGAAATACGTTTGCGAGTACA
CTAAGCGGCCAAGTAAAACGCAATAATTTTTATGCTAATGTCCGTAAATACAAATCGGCACGGGAAGCCGCACTATCCGC
CAACAATATTCCGGAGTCGGTATATGATAATTTAGTGGAAACAATCAATAAAAACTTGCCGCTTCTACACCGTTATGTCG
CATTACGGAAAAAGGTGCTTGGACTTGATGAATTGCATATGTATGATTTGTATACACCGCTTGTTAAAGATGTCAAAATG
GAAGTGACCTTTGAAGAGGCAAAAGATATCGTCTTAAAAGGATTGGCTCCAATGGGGGAAGAATATCTTTCCGTTTTAAA
AGAAGGGTTTGCCAATCGCTGGGTAGATGTCCATGAAAATAAAGGAAAAAGAAGCGGGGCTTACTCATCCGGAGCGTATG
GAACCGATCCGTATATATTGTTAAACTGGCAAGACAATGTCAATAATTTGTTTACCCTTGCCCATGAATTTGGTCATTCG
GTACATAGTTACTATACAAGGAAATACCAACCATTTCCTTATGGCGATTATTCGATTTTTGTTGCCGAAGTTGCCTCCAC
TTGTAATGAAAATTTATTAAGTGAGTATTTGTTAAAAACATTGGACGATGATAGAAAACGGCTGTACATTTTGAATAATT
ATTTGGAAACATTCCGTGGCACGGTATTCCGGCAGACCATGTTTGCTGAATTTGAACATGATATTCACATTCGTTCCCAA
AAAGGGGAAGCATTGACGGCAGAGTTATTGACAAATATTTATTATGATTTGAATAAAAAATATTTTGGTGATGATGTTGT
TATTGACGAGGAAATTGGCTTAGAATGGGCGAGAATTCCGCATTTCTACTACAACTATTATGTTTACCAATATGCAACGG
GCTTAAGTGCATCAACGGCATTGAGTAAACAAATTTTAGAAGAAGGAGAGCCTGCCGTAGAACGATATATCGGTTATTTG
AAATCCGGAAGCTCGGATTATCCAATCGAAGTGTTGAAAAAAGCAGGGGTGGATATGACAACGGCGGAACCAATCGAAAA
TGCCTGCAAAGTTTTTGAAGAGAAATTGACTGAAATGGAACGACTATTAAATAGATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.265

98.017

0.502

Multiple sequence alignment