Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NSQ86_RS05815 Genome accession   NZ_CP163265
Coordinates   1177015..1177962 (+) Length   315 a.a.
NCBI ID   WP_368997441.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL M8-0368     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1172015..1182962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ86_RS05800 argS 1172628..1174334 (+) 1707 WP_368997437.1 arginine--tRNA ligase -
  NSQ86_RS05805 - 1174549..1175583 (-) 1035 WP_368997439.1 NADH:flavin oxidoreductase/NADH oxidase -
  NSQ86_RS05810 - 1175959..1176708 (+) 750 WP_051989024.1 EAL domain-containing protein -
  NSQ86_RS05815 ceuB 1177015..1177962 (+) 948 WP_368997441.1 ABC transporter permease Machinery gene
  NSQ86_RS05820 - 1177959..1178909 (+) 951 WP_034768950.1 iron chelate uptake ABC transporter family permease subunit -
  NSQ86_RS05825 - 1178903..1179661 (+) 759 WP_034768951.1 ABC transporter ATP-binding protein -
  NSQ86_RS05830 - 1179861..1180826 (+) 966 WP_368997443.1 siderophore ABC transporter substrate-binding protein -
  NSQ86_RS05835 - 1181099..1182160 (+) 1062 WP_034768953.1 C45 family peptidase -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34568.73 Da        Isoelectric Point: 10.0987

>NTDB_id=1029131 NSQ86_RS05815 WP_368997441.1 1177015..1177962(+) (ceuB) [Caldifermentibacillus hisashii strain FSL M8-0368]
MKKRYLLLVLIILSLISLFIGVSDISVMDIFHLTDKQWQILVVSRIPRLISIIVSGASLSIAGLIMQSLSRNKFVSPTTA
GTMDFARLGILVAMIVFSGAGSLSKMFVAFVFALAGTFLFMKILERIKFKDAIFIPLVGLMLGNIVSSIATFFAYQNDLI
QNISSWLIGDFSIILKGNYELIFISVPLLFIAYLYANKFTIAGMGEDFSKGLGLNYRQVVNLGLIIVALITSSVVLTVGV
IPFLGLIIPNVVSIYRGDHLKNSLAPTAILGAIFVLFCDILGRVIIYPYEIPINLTVGVIGSAIFIYLLLRRQAQ

Nucleotide


Download         Length: 948 bp        

>NTDB_id=1029131 NSQ86_RS05815 WP_368997441.1 1177015..1177962(+) (ceuB) [Caldifermentibacillus hisashii strain FSL M8-0368]
ATGAAGAAGAGATACCTACTCCTAGTACTGATTATCCTTTCACTTATATCCCTCTTTATCGGGGTATCAGATATTTCAGT
GATGGATATCTTTCATTTAACAGATAAACAATGGCAAATATTAGTAGTCAGTAGAATTCCAAGGCTAATCAGTATTATTG
TCTCGGGGGCATCGCTGAGTATTGCCGGGCTGATTATGCAAAGCTTAAGTCGAAATAAATTCGTCTCACCAACAACAGCG
GGTACGATGGATTTTGCCCGACTGGGAATTCTCGTTGCTATGATTGTTTTTTCCGGTGCCGGTTCACTTAGCAAAATGTT
TGTTGCTTTTGTATTCGCTTTAGCAGGGACCTTCCTGTTTATGAAAATCTTAGAAAGAATTAAATTTAAGGATGCGATAT
TTATCCCGCTTGTCGGGTTAATGCTAGGAAATATTGTCAGTTCAATTGCAACATTTTTTGCCTATCAAAATGATTTAATT
CAAAATATCTCATCATGGTTAATTGGTGATTTTTCCATCATTTTAAAAGGAAATTATGAATTAATTTTTATCAGTGTGCC
ACTCTTGTTTATTGCGTATCTTTATGCCAACAAATTTACAATTGCCGGAATGGGGGAGGATTTTTCAAAAGGTCTTGGTT
TAAACTACCGTCAAGTAGTTAATCTCGGTTTAATCATCGTTGCTCTTATTACATCATCGGTTGTCTTAACCGTTGGGGTA
ATCCCATTTTTGGGCCTTATTATTCCAAATGTTGTTTCGATTTATCGAGGCGATCATTTGAAGAATAGTTTAGCCCCAAC
AGCAATACTTGGTGCCATTTTTGTTCTGTTTTGCGATATTCTCGGTCGAGTGATTATTTATCCGTATGAAATTCCAATCA
ATTTGACAGTAGGTGTTATTGGCAGTGCAATTTTTATTTACTTATTATTGAGGAGACAGGCACAATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.019

98.73

0.533

Multiple sequence alignment