Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NST54_RS12375 Genome accession   NZ_CP163264
Coordinates   2477758..2480154 (-) Length   798 a.a.
NCBI ID   WP_368985368.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL K6-0152     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2472758..2485154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST54_RS12355 (NST54_12355) - 2472849..2473118 (-) 270 WP_034771279.1 IreB family regulatory phosphoprotein -
  NST54_RS12360 (NST54_12360) alaS 2473343..2475973 (-) 2631 WP_343157195.1 alanine--tRNA ligase -
  NST54_RS12365 (NST54_12365) - 2476348..2477415 (-) 1068 WP_343157197.1 AI-2E family transporter -
  NST54_RS12370 (NST54_12370) - 2477460..2477654 (-) 195 WP_368985367.1 hypothetical protein -
  NST54_RS12375 (NST54_12375) recD2 2477758..2480154 (-) 2397 WP_368985368.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NST54_RS12380 (NST54_12380) mnmA 2480440..2481564 (-) 1125 WP_368985369.1 tRNA 2-thiouridine(34) synthase MnmA -
  NST54_RS12385 (NST54_12385) - 2481576..2482721 (-) 1146 WP_342020331.1 cysteine desulfurase family protein -
  NST54_RS12390 (NST54_12390) - 2482788..2483210 (-) 423 WP_041847517.1 Rrf2 family transcriptional regulator -
  NST54_RS12395 (NST54_12395) - 2483349..2483999 (-) 651 WP_368985371.1 YitT family protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90583.71 Da        Isoelectric Point: 5.2946

>NTDB_id=1029102 NST54_RS12375 WP_368985368.1 2477758..2480154(-) (recD2) [Caldifermentibacillus hisashii strain FSL K6-0152]
MQQEERYIKGRPIVTIFHNEQNLYTVLRIRVDESNEAGVNKDAVVTGYFPRLYEEETYIFYGKFTDHPKYGPQFQVDHFQ
KDLPKTKQGVVQYLSSELFKGIGKKTAENIVDVLGENAIERIMKQPSLLDKVPKLAADKAKLLHEKLIEYQGLENIMVGL
NQYGFGPQLAMRIYQTYKEHTLEIVENNPYKLVEDIEGIGFGRADELGFKLGMKGNHPDRVKAGCLYTLETDCIQEGHCY
LEKKTFIPTVKKLLESNQPVEIFPEDIEHELLKLEEEGKIVVDEERVFLPSIFYSEKGLVTNIKRILAQKEFEDGFPESE
FLLALGSLEERLGIQYAPSQREAIQTALSSPMLILTGGPGTGKTTVIKGIVELYGELHGCSLDPKDYKKDEVFPFVLAAP
TGRAAKRMAESTGLPAVTIHRLLGWNGTETFDYNEDNPIEGKIVIIDEMSMVDIWLAHHLFKALPAHVQVILVGDEDQLP
SVGPGQVLKDLLASERIPTVRLTDIYRQESGSSIIQLAHAIKNGTIPEDLRLQQKDRSFISCRTTQVADVVKQVVGHAIN
KGYTPKDIQVLAPMYRGPAGIDELNILLQEILNGTNKEKRRELNFGDHTYRVGDKVLQLVNQPDKNIFNGDIGEIVAIFY
AKESEDKVDQLVVSFDGNEVTYPRQDLHQITLAYCCSIHKSQGSEFPIVILPIVRGYHRMLRRNLIYTAITRSKEKLILC
GEEDAFRTAVYRTDDNMRNTTLKKRLLQEINGIHTPNMGLVKEDMSYEERLMNTDPMVGMENISPYDFMFEDRAEYLS

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=1029102 NST54_RS12375 WP_368985368.1 2477758..2480154(-) (recD2) [Caldifermentibacillus hisashii strain FSL K6-0152]
ATGCAACAAGAAGAACGTTATATTAAGGGGCGACCGATCGTCACCATTTTTCACAATGAACAAAATTTATATACCGTTCT
TCGGATTCGTGTCGATGAATCAAATGAGGCTGGTGTAAACAAAGATGCGGTTGTCACCGGTTATTTCCCCCGTCTGTATG
AAGAAGAAACATATATTTTTTACGGAAAGTTTACGGATCATCCAAAATATGGCCCACAATTTCAAGTTGACCATTTTCAA
AAAGATCTGCCAAAGACAAAACAAGGTGTTGTTCAATATTTATCAAGTGAACTTTTTAAAGGAATTGGAAAGAAAACGGC
CGAAAATATTGTGGACGTGCTGGGTGAAAATGCTATCGAACGCATCATGAAACAGCCGTCTTTATTGGATAAGGTACCGA
AATTGGCTGCTGATAAGGCAAAATTGTTACATGAAAAATTAATCGAGTATCAAGGGTTAGAAAATATTATGGTCGGTTTG
AATCAATACGGGTTCGGTCCGCAGCTGGCCATGCGCATCTATCAAACATATAAAGAGCATACACTGGAAATCGTTGAAAA
TAACCCGTATAAACTTGTGGAAGATATTGAAGGAATTGGCTTTGGTCGGGCAGATGAACTTGGCTTTAAACTCGGCATGA
AAGGAAATCATCCGGATCGGGTTAAGGCCGGTTGTTTATACACATTAGAAACAGATTGTATTCAAGAAGGTCATTGTTAT
TTGGAAAAGAAAACTTTTATTCCGACTGTTAAAAAGTTGCTGGAATCTAACCAGCCGGTGGAAATTTTTCCGGAAGATAT
TGAGCATGAACTTTTGAAACTGGAAGAAGAAGGAAAGATCGTCGTCGATGAGGAACGTGTATTTCTACCTTCCATTTTTT
ATTCGGAAAAAGGTTTGGTAACGAATATAAAAAGAATCTTGGCTCAAAAAGAATTTGAAGACGGCTTTCCGGAATCGGAA
TTTCTACTTGCATTAGGTAGTTTAGAGGAACGGCTTGGTATTCAATATGCTCCGTCACAAAGGGAAGCAATTCAAACCGC
ACTCTCCAGTCCAATGTTAATTTTAACCGGCGGACCGGGAACGGGAAAAACGACGGTAATTAAAGGAATCGTTGAACTGT
ATGGAGAATTGCACGGTTGCAGTTTGGATCCAAAAGACTATAAAAAGGATGAAGTGTTTCCGTTTGTGTTGGCTGCTCCA
ACCGGTCGAGCCGCAAAACGGATGGCGGAATCAACCGGTTTACCGGCAGTAACGATTCATCGATTACTCGGCTGGAATGG
AACCGAAACCTTTGATTATAACGAAGATAATCCGATTGAAGGGAAGATTGTTATCATTGATGAGATGTCGATGGTTGACA
TTTGGCTTGCCCATCATTTATTTAAAGCGTTGCCTGCGCATGTGCAAGTTATTTTGGTCGGTGATGAAGATCAATTACCT
TCCGTTGGCCCGGGGCAAGTTTTGAAAGATTTATTAGCCTCAGAACGAATTCCGACCGTTCGTTTGACGGATATTTATCG
ACAAGAAAGCGGCTCATCCATTATTCAGCTTGCTCATGCCATAAAAAACGGGACGATACCGGAAGATTTAAGACTGCAAC
AAAAGGATCGTTCATTCATTTCTTGCCGTACGACACAAGTTGCAGATGTCGTAAAGCAGGTCGTCGGACATGCAATCAAT
AAAGGTTATACACCTAAAGATATTCAAGTTTTGGCACCGATGTATCGGGGGCCGGCCGGAATTGATGAACTGAATATACT
TCTCCAAGAAATATTGAATGGAACGAACAAGGAAAAGCGAAGGGAATTAAACTTTGGCGACCATACTTACCGGGTTGGTG
ATAAAGTTTTGCAATTAGTCAATCAACCGGATAAAAATATTTTTAACGGTGATATCGGTGAAATTGTAGCTATCTTTTAT
GCAAAAGAGTCGGAGGACAAAGTTGATCAACTGGTCGTTTCTTTTGACGGCAATGAAGTTACTTACCCGAGACAGGATTT
ACATCAAATTACCCTTGCCTATTGCTGCAGTATTCACAAATCGCAAGGGAGCGAATTTCCGATTGTCATTCTACCGATTG
TCAGAGGCTATCACCGGATGTTACGGAGAAATCTTATTTATACGGCCATCACGCGGAGTAAAGAAAAATTAATTTTATGC
GGGGAAGAAGATGCCTTTCGAACCGCCGTTTATCGTACGGATGATAATATGAGGAACACGACGTTAAAGAAGCGATTATT
GCAAGAAATAAACGGGATTCACACTCCAAATATGGGGTTGGTGAAAGAAGATATGTCTTATGAAGAACGATTAATGAATA
CGGATCCGATGGTTGGCATGGAGAATATTAGCCCGTATGATTTCATGTTTGAAGATAGAGCGGAATATTTAAGCTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)

Helix-hairpin-helix containing domain (HHH_RecD2)

(150-240)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-655)

AAA domain (AAA_30)

(336-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.665

99.373

0.613

Multiple sequence alignment