Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   NCTC86EC_RS21345 Genome accession   NZ_LT601384
Coordinates   4340239..4341231 (+) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli isolate NCTC86EC     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4335239..4346231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCTC86EC_RS21320 (NCTC86EC_04293) rbsD 4335363..4335782 (+) 420 WP_001301979.1 D-ribose pyranase -
  NCTC86EC_RS21325 (NCTC86EC_04294) rbsA 4335790..4337295 (+) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  NCTC86EC_RS21330 (NCTC86EC_04295) rbsC 4337300..4338265 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  NCTC86EC_RS21335 (NCTC86EC_04296) rbsB 4338290..4339180 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  NCTC86EC_RS21340 (NCTC86EC_04297) rbsK 4339306..4340235 (+) 930 WP_001300603.1 ribokinase -
  NCTC86EC_RS21345 (NCTC86EC_04298) cytR 4340239..4341231 (+) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  NCTC86EC_RS21350 (NCTC86EC_04299) mdtD 4341197..4342624 (-) 1428 WP_001280858.1 multidrug transporter subunit MdtD -
  NCTC86EC_RS21355 (NCTC86EC_04300) yieP 4342647..4343339 (-) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=1029094 NCTC86EC_RS21345 WP_000224470.1 4340239..4341231(+) (cytR) [Escherichia coli isolate NCTC86EC]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=1029094 NCTC86EC_RS21345 WP_000224470.1 4340239..4341231(+) (cytR) [Escherichia coli isolate NCTC86EC]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment