Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NST54_RS06825 Genome accession   NZ_CP163264
Coordinates   1399690..1401507 (+) Length   605 a.a.
NCBI ID   WP_368986882.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL K6-0152     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1394690..1406507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST54_RS06805 (NST54_06805) trpS 1394963..1395949 (-) 987 WP_341287541.1 tryptophan--tRNA ligase -
  NST54_RS06810 (NST54_06810) spxA 1396679..1397074 (+) 396 WP_034769143.1 transcriptional regulator SpxA -
  NST54_RS06815 (NST54_06815) mecA 1397554..1398219 (+) 666 WP_341287542.1 adaptor protein MecA -
  NST54_RS06820 (NST54_06820) - 1398389..1399588 (+) 1200 WP_341287543.1 competence protein CoiA family protein -
  NST54_RS06825 (NST54_06825) pepF 1399690..1401507 (+) 1818 WP_368986882.1 oligoendopeptidase F Regulator
  NST54_RS06830 (NST54_06830) - 1401615..1401794 (-) 180 WP_341287545.1 hypothetical protein -
  NST54_RS06835 (NST54_06835) - 1402464..1403462 (-) 999 WP_368986883.1 ClpXP adapter SpxH family protein -
  NST54_RS06840 (NST54_06840) - 1403459..1403869 (-) 411 WP_341287547.1 globin -
  NST54_RS06845 (NST54_06845) - 1404109..1404720 (-) 612 WP_368986885.1 lytic transglycosylase domain-containing protein -
  NST54_RS06850 (NST54_06850) - 1404743..1405327 (-) 585 WP_341287549.1 CYTH domain-containing protein -
  NST54_RS06855 (NST54_06855) - 1405687..1406313 (+) 627 WP_368986887.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69930.80 Da        Isoelectric Point: 4.8629

>NTDB_id=1029089 NST54_RS06825 WP_368986882.1 1399690..1401507(+) (pepF) [Caldifermentibacillus hisashii strain FSL K6-0152]
MSTEKAVKKLPTRNEIPVKETWALENIFASDEKWKEEYDQIKAMIPKAFEYQGKLGEGADTLYEALQYQDEVMMRLGKLY
TYTHMRYDQDTTNSFYQGMNDQARNLYTQAASAFSFVVPELLAIDENKILQFLTEKEELKLYEHALEEINLQRPHVLSPE
VEAILAQSAEVTDAPSNTFGMLNNADLEFPSIVDENGEEVEITHGRYIRFLESADRRVRKDAFHALYETYGKFRNTFAST
LSGQVKRNNFYANVRKYKSAREAALSANNIPESVYDNLVETINKNLPLLHRYVALRKKVLGLDELHMYDLYTPLVKDVKM
EVTYEEAKDIVLKGLAPMGEEYLSVLKEGFANRWVDVHENKGKRSGAYSSGAYGTDPYILLNWQDNVNNLFTLAHEFGHS
VHSYYTRKYQPFPYGDYSIFVAEVASTCNENLLSEYLLKTLDDDKKRLYILNNYLETFRGTVFRQTMFAEFEHDIHVRSQ
NGEALTAELLTNIYYDLNKKYFGDDVVIDEEIGLEWARIPHFYYNYYVYQYATGLSASTALSKQILEEGKPAVERYIGYL
KSGSSDYPIEVLKKAGVDMTTAEPIENACKVFEEKLTEMERLLNR

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1029089 NST54_RS06825 WP_368986882.1 1399690..1401507(+) (pepF) [Caldifermentibacillus hisashii strain FSL K6-0152]
ATGTCAACAGAAAAAGCAGTAAAAAAACTGCCGACAAGAAATGAAATTCCGGTAAAGGAAACATGGGCACTGGAAAATAT
TTTTGCATCAGATGAAAAATGGAAAGAGGAGTATGATCAGATTAAAGCGATGATTCCCAAAGCTTTTGAATATCAAGGGA
AACTTGGTGAAGGTGCTGACACTCTATATGAAGCATTGCAATATCAAGATGAAGTGATGATGCGACTGGGGAAATTGTAT
ACATATACGCATATGCGATATGATCAGGATACGACAAATTCTTTCTATCAAGGAATGAATGATCAAGCGAGAAATTTGTA
TACTCAGGCAGCAAGTGCTTTTTCCTTCGTTGTCCCCGAATTACTGGCGATTGATGAGAATAAAATCCTGCAGTTTTTAA
CCGAAAAAGAAGAATTAAAGTTATATGAGCATGCTTTAGAAGAAATTAATTTGCAACGTCCGCATGTATTGTCACCTGAA
GTAGAAGCGATTTTAGCCCAAAGTGCAGAAGTGACGGATGCACCGAGTAATACATTCGGCATGCTAAATAACGCAGACTT
GGAGTTTCCATCTATTGTGGATGAAAACGGAGAAGAAGTCGAAATAACGCACGGCCGTTATATTCGCTTTTTAGAAAGTG
CGGATCGCCGTGTGCGAAAAGATGCGTTTCATGCTTTATATGAAACGTATGGGAAATTTCGAAATACGTTTGCGAGTACA
CTAAGCGGACAAGTAAAACGCAATAATTTTTATGCGAATGTCCGTAAATATAAATCGGCACGGGAAGCCGCACTATCCGC
CAATAATATTCCGGAGTCGGTATATGATAATTTAGTGGAAACAATCAATAAAAACTTGCCGCTTTTACACCGTTATGTCG
CATTACGGAAAAAGGTGCTTGGACTTGATGAATTGCATATGTATGATTTGTATACACCGCTTGTGAAAGATGTCAAAATG
GAAGTGACCTATGAGGAGGCAAAAGATATCGTCTTAAAAGGATTGGCTCCAATGGGGGAAGAATATCTTTCCGTGTTAAA
AGAAGGGTTTGCCAATCGCTGGGTAGATGTCCATGAAAATAAAGGAAAAAGAAGCGGGGCCTATTCATCCGGAGCTTATG
GAACTGATCCGTATATACTGTTAAACTGGCAAGACAATGTCAATAATTTATTTACCCTTGCCCATGAATTTGGTCATTCG
GTGCATAGTTACTATACAAGGAAATACCAACCATTTCCTTATGGCGATTATTCGATTTTTGTTGCCGAAGTTGCCTCCAC
TTGTAATGAAAATTTATTAAGTGAGTATTTGTTAAAAACATTGGACGATGATAAAAAACGGCTGTACATTTTGAATAATT
ATTTGGAAACATTCCGTGGCACGGTATTCCGTCAGACTATGTTTGCTGAATTTGAACATGATATTCACGTTCGTTCCCAA
AACGGGGAAGCATTGACAGCTGAACTGCTAACAAATATTTATTATGATTTGAATAAAAAATATTTTGGTGATGATGTTGT
TATTGACGAGGAAATTGGCTTAGAATGGGCGAGAATCCCGCATTTCTACTACAACTATTATGTTTACCAATATGCAACAG
GTTTGAGTGCATCAACGGCATTGAGTAAACAAATTTTAGAAGAAGGAAAGCCTGCCGTGGAACGATATATCGGTTATTTG
AAATCCGGAAGCTCGGACTATCCGATTGAAGTGTTGAAAAAAGCCGGGGTGGATATGACAACGGCGGAACCGATCGAAAA
TGCCTGCAAAGTTTTTGAAGAGAAATTGACTGAAATGGAACGGCTTTTAAATAGATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-589)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.265

98.017

0.502

Multiple sequence alignment