Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NST54_RS06295 Genome accession   NZ_CP163264
Coordinates   1290420..1291367 (+) Length   315 a.a.
NCBI ID   WP_368986814.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL K6-0152     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1285420..1296367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST54_RS06280 (NST54_06280) argS 1286032..1287738 (+) 1707 WP_368986812.1 arginine--tRNA ligase -
  NST54_RS06285 (NST54_06285) - 1287955..1288989 (-) 1035 WP_343156599.1 NADH:flavin oxidoreductase/NADH oxidase -
  NST54_RS06290 (NST54_06290) - 1289364..1290113 (+) 750 WP_343190946.1 EAL domain-containing protein -
  NST54_RS06295 (NST54_06295) ceuB 1290420..1291367 (+) 948 WP_368986814.1 ABC transporter permease Machinery gene
  NST54_RS06300 (NST54_06300) - 1291364..1292314 (+) 951 WP_343190948.1 iron chelate uptake ABC transporter family permease subunit -
  NST54_RS06305 (NST54_06305) - 1292308..1293066 (+) 759 WP_343156602.1 ABC transporter ATP-binding protein -
  NST54_RS06310 (NST54_06310) - 1293269..1294234 (+) 966 WP_343190949.1 siderophore ABC transporter substrate-binding protein -
  NST54_RS06315 (NST54_06315) - 1294405..1295466 (+) 1062 WP_341287489.1 C45 family peptidase -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34616.77 Da        Isoelectric Point: 10.0987

>NTDB_id=1029084 NST54_RS06295 WP_368986814.1 1290420..1291367(+) (ceuB) [Caldifermentibacillus hisashii strain FSL K6-0152]
MKKRYLLLVLIILSLISLFIGVSDISVMDIFHLTDKQWQILVVSRIPRLISIIVSGASLSIAGLIMQSLSRNKFVSPTTA
GTMDFARLGILVAMIVFAGAGSLSKMFVAFVFALAGTFLFMKILERIKFKDAIFIPLVGLMLGNIISSVATFFAYQNDLI
QNISSWLIGDFSIILKGNYELIFISVPLLFIAYLYANKFTIAGMGEDFSKGLGLNYRQVVNFGLVIVALITSSVVLTVGV
IPFLGLIIPNIVSIYRGDHLKNSLAPTAILGAIFVLFCDILGRVIIYPYEIPINLTVGVIGSAIFIYLLLRRQTQ

Nucleotide


Download         Length: 948 bp        

>NTDB_id=1029084 NST54_RS06295 WP_368986814.1 1290420..1291367(+) (ceuB) [Caldifermentibacillus hisashii strain FSL K6-0152]
ATGAAGAAGAGATACCTACTCCTAGTACTGATTATCCTTTCACTTATATCCCTCTTTATCGGGGTATCAGATATTTCAGT
GATGGATATCTTTCATTTAACAGATAAACAATGGCAAATATTAGTAGTCAGTAGAATTCCAAGGCTAATCAGTATTATTG
TCTCGGGGGCATCGCTGAGTATTGCCGGGCTGATTATGCAAAGCTTAAGCCGCAATAAATTCGTCTCACCGACAACAGCA
GGTACGATGGATTTTGCCCGACTGGGAATTCTCGTTGCTATGATTGTTTTTGCCGGTGCCGGTTCACTTAGCAAAATGTT
TGTTGCTTTTGTATTCGCTTTAGCAGGGACCTTCCTGTTTATGAAAATCTTAGAAAGAATTAAATTTAAGGATGCGATAT
TTATCCCGCTTGTCGGGTTAATGTTGGGAAATATTATCAGTTCGGTTGCAACATTTTTTGCCTATCAAAACGATTTAATT
CAAAATATCTCATCATGGCTAATTGGTGATTTTTCCATCATTTTAAAAGGTAATTATGAATTAATTTTTATTAGTGTTCC
ACTCTTGTTTATTGCGTATCTTTATGCCAACAAATTTACGATTGCCGGAATGGGGGAGGATTTTTCAAAAGGTCTTGGTT
TGAACTACCGTCAAGTAGTTAATTTTGGTTTAGTCATCGTTGCTCTTATTACATCATCGGTTGTGTTAACCGTTGGGGTA
ATCCCCTTTTTGGGCCTTATTATTCCAAATATTGTTTCGATTTATCGAGGCGATCATTTGAAGAATAGTTTAGCCCCAAC
TGCAATCCTTGGTGCCATCTTTGTTCTGTTTTGCGATATTCTCGGTCGAGTGATCATTTATCCGTATGAAATTCCAATTA
ATTTGACAGTAGGTGTTATCGGCAGTGCAATTTTTATTTACTTATTATTGAGGAGACAGACACAATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.698

98.73

0.53

Multiple sequence alignment