Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   NCTC86EC_RS16980 Genome accession   NZ_LT601384
Coordinates   3451725..3452201 (+) Length   158 a.a.
NCBI ID   WP_001186724.1    Uniprot ID   -
Organism   Escherichia coli isolate NCTC86EC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3446725..3457201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCTC86EC_RS16955 istB 3446906..3447652 (-) 747 Protein_3277 IS21-like element ISEc12 family helper ATPase IstB -
  NCTC86EC_RS16960 (NCTC86EC_03418) istA 3447667..3449208 (-) 1542 WP_001620815.1 IS21-like element ISEc12 family transposase -
  NCTC86EC_RS16965 (NCTC86EC_03419) - 3449403..3449831 (+) 429 Protein_3279 autotransporter outer membrane beta-barrel domain-containing protein -
  NCTC86EC_RS16970 (NCTC86EC_03420) - 3450148..3450966 (+) 819 WP_001522287.1 DUF932 domain-containing protein -
  NCTC86EC_RS28905 (NCTC86EC_03421) - 3450966..3451142 (+) 177 WP_001522285.1 hypothetical protein -
  NCTC86EC_RS16975 (NCTC86EC_03422) - 3451237..3451710 (+) 474 WP_001522284.1 antirestriction protein -
  NCTC86EC_RS16980 (NCTC86EC_03423) radC 3451725..3452201 (+) 477 WP_001186724.1 RadC family protein Machinery gene
  NCTC86EC_RS16985 (NCTC86EC_03424) istA 3452382..3453881 (+) 1500 WP_001522281.1 IS21-like element ISEc10 family transposase -
  NCTC86EC_RS16990 (NCTC86EC_03425) istB 3453878..3454633 (+) 756 WP_001522280.1 IS21-like element ISEc10 family helper ATPase IstB -
  NCTC86EC_RS16995 (NCTC86EC_03426) - 3454685..3454906 (+) 222 WP_023909484.1 DUF987 domain-containing protein -
  NCTC86EC_RS17000 (NCTC86EC_03427) cbeA 3454986..3455360 (+) 375 WP_001522275.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  NCTC86EC_RS17005 (NCTC86EC_03428) - 3455407..3455781 (+) 375 WP_068879483.1 TA system toxin CbtA family protein -
  NCTC86EC_RS17010 (NCTC86EC_03429) - 3455778..3456269 (+) 492 WP_001522269.1 DUF5983 family protein -
  NCTC86EC_RS17015 (NCTC86EC_03430) - 3456281..3456478 (+) 198 WP_001522268.1 DUF957 domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17674.35 Da        Isoelectric Point: 7.2020

>NTDB_id=1029074 NCTC86EC_RS16980 WP_001186724.1 3451725..3452201(+) (radC) [Escherichia coli isolate NCTC86EC]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1029074 NCTC86EC_RS16980 WP_001186724.1 3451725..3452201(+) (radC) [Escherichia coli isolate NCTC86EC]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGAGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCGCA
CAATCACCCGTCAGGTGAAGTCACACCCAGTAAGGCTGACCGCCTTATTACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392