Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NSQ45_RS12255 Genome accession   NZ_CP163263
Coordinates   2539157..2541517 (-) Length   786 a.a.
NCBI ID   WP_368993240.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL K6-2747     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2534157..2546517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ45_RS12235 (NSQ45_12235) - 2535036..2535212 (-) 177 WP_034771312.1 hypothetical protein -
  NSQ45_RS12240 (NSQ45_12240) dtd 2535511..2535963 (-) 453 WP_034771313.1 D-aminoacyl-tRNA deacylase -
  NSQ45_RS12245 (NSQ45_12245) - 2535977..2538169 (-) 2193 WP_368993238.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  NSQ45_RS12250 (NSQ45_12250) - 2538654..2539166 (-) 513 WP_041846212.1 adenine phosphoribosyltransferase -
  NSQ45_RS12255 (NSQ45_12255) recJ 2539157..2541517 (-) 2361 WP_368993240.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NSQ45_RS12260 (NSQ45_12260) secDF 2541626..2543887 (-) 2262 WP_368993242.1 protein translocase subunit SecDF -
  NSQ45_RS12265 (NSQ45_12265) - 2544014..2544313 (-) 300 WP_052480435.1 post-transcriptional regulator -
  NSQ45_RS12270 (NSQ45_12270) spoVB 2544446..2545996 (+) 1551 WP_368993244.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88965.37 Da        Isoelectric Point: 5.6253

>NTDB_id=1029057 NSQ45_RS12255 WP_368993240.1 2539157..2541517(-) (recJ) [Caldifermentibacillus hisashii strain FSL K6-2747]
MLQAKTRWAVREGNRQKAEQLMNELQLTPLVANLLVNRGLDTAESVKKFLNPDEEFHHPFLLNDMDICVERIFRAIRNGE
RMVVYGDYDADGVTSTYVLLKTLRELGADADFYIPNRFTEGYGPNEKAFRTLKEAGYHLIITVDNGIAGIHEAKVAKEIG
IDLIITDHHEPGPELPDCLAIIHPKRADSNYPFKDLAGVGVAFKLVTALLGKVPEELLPFAAIGTIADLVPLKDENRLIV
KKALPLLQSSDHFGLKALMWIAGINQQELNEESISFGLAPRINAPGRLYHAGMVVDLFLANDKDEAEQLAHEINEINKER
QEIVDKITVEAIEEISQSSNYIDDQVIVVGKEGWHAGVIGIVASRLVEKFYRPVIVFSFDQATGLAKGSARSIPKFNMYQ
NLFQCKELLPHFGGHPVAAGLTMKISDVPELRERLNRLASEQLDEEDFIPVTEVDGMIPLEDIHLQSVKELLQFAPFGTE
NPKPLLLINDIQLPQIKKVGAEKNHLKAIIENHSAQLDCIGFHMGDLADEISPLSKASVIGELAINEWNHVSKPQFILKD
ICIDEWQLFDYRGNRRIDQWIHQVPEKSSKLIVFRESTVNQMNLSEFAAGLEIIHSEASAKNCDIDGMNIVLIDLPQSKK
QLESLLAGKQVARIYAHFYQDDIELLNTMPTREHFKWMYAFLCKKGVFDFRRYGAELAKYKGWSLHTIKFMLTVFFELNF
VTMDNGILSVIKNPSKRDLSESKTYQLRQEIIQLEKELLFSSYKQLKNSLDRFIGTANMKEAKAWI

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=1029057 NSQ45_RS12255 WP_368993240.1 2539157..2541517(-) (recJ) [Caldifermentibacillus hisashii strain FSL K6-2747]
ATGTTGCAAGCAAAGACGCGTTGGGCGGTTCGAGAAGGAAATCGTCAAAAAGCGGAACAATTAATGAATGAACTGCAGTT
GACACCTCTAGTAGCAAATTTATTAGTCAATCGAGGTTTAGATACGGCTGAAAGTGTAAAGAAATTTTTAAATCCGGATG
AAGAGTTTCACCATCCTTTTTTGCTTAATGATATGGATATATGTGTTGAACGAATTTTTCGGGCAATTCGAAATGGTGAG
CGAATGGTCGTGTATGGCGACTATGATGCCGATGGAGTAACAAGTACTTATGTATTATTGAAAACATTACGTGAACTCGG
TGCGGATGCCGATTTTTATATACCAAATCGCTTCACGGAAGGATACGGCCCAAATGAAAAAGCATTTCGAACACTGAAAG
AAGCCGGTTATCATTTAATTATCACGGTTGATAACGGAATTGCCGGGATTCATGAAGCAAAAGTGGCAAAAGAAATTGGT
ATTGATTTAATCATCACCGATCATCACGAACCCGGACCGGAACTCCCGGATTGTTTGGCGATTATTCATCCGAAGAGGGC
TGATTCCAATTACCCGTTTAAAGATTTAGCCGGTGTCGGTGTCGCGTTTAAATTGGTGACGGCTCTTTTAGGGAAAGTTC
CGGAAGAATTGCTTCCGTTTGCAGCAATCGGAACTATAGCTGATTTAGTACCTCTCAAAGATGAAAATCGCTTGATTGTA
AAAAAAGCATTACCTCTCTTACAATCGTCGGATCATTTTGGTTTAAAGGCGTTAATGTGGATTGCCGGGATCAATCAGCA
AGAATTAAATGAGGAATCAATTAGTTTTGGACTAGCCCCGCGGATAAACGCTCCCGGAAGATTATACCATGCCGGTATGG
TCGTTGATTTATTTTTGGCAAATGATAAAGATGAGGCTGAACAATTGGCCCATGAAATTAATGAAATCAATAAAGAAAGA
CAAGAAATCGTCGATAAAATAACTGTTGAAGCGATTGAGGAAATTTCTCAATCATCAAATTACATAGACGATCAGGTCAT
TGTGGTCGGTAAGGAAGGCTGGCATGCAGGGGTCATTGGCATTGTTGCTTCCAGATTAGTGGAAAAATTTTATCGGCCGG
TTATTGTTTTTTCTTTTGATCAAGCAACCGGATTGGCTAAGGGTTCGGCAAGAAGTATTCCAAAATTTAATATGTATCAA
AATTTGTTCCAATGTAAAGAACTTTTGCCGCATTTTGGAGGACACCCGGTGGCTGCCGGGCTGACTATGAAAATCTCAGA
TGTTCCGGAATTAAGGGAACGGTTGAACCGGTTGGCAAGTGAACAATTAGATGAAGAGGATTTTATCCCGGTTACTGAAG
TCGATGGGATGATTCCATTGGAGGATATCCATTTGCAATCTGTTAAAGAATTGCTTCAGTTTGCCCCGTTTGGAACAGAA
AATCCAAAACCATTGCTTTTAATAAATGATATTCAATTGCCACAAATCAAAAAAGTCGGTGCAGAGAAAAATCATCTGAA
AGCAATCATTGAAAACCATTCGGCTCAACTTGATTGTATCGGTTTTCATATGGGGGATCTTGCCGATGAAATATCACCAT
TATCGAAAGCTTCGGTCATTGGAGAGTTAGCGATTAATGAATGGAATCATGTCAGTAAACCGCAGTTCATATTAAAAGAT
ATTTGTATTGATGAATGGCAATTGTTTGATTATCGCGGTAACCGAAGAATCGACCAGTGGATTCATCAAGTACCGGAAAA
AAGCAGTAAACTGATTGTTTTTCGCGAATCCACCGTCAACCAAATGAATTTATCCGAATTCGCTGCCGGTCTTGAAATCA
TCCATTCTGAAGCCTCAGCGAAAAATTGTGATATCGACGGAATGAACATTGTTCTAATTGATTTACCCCAATCAAAAAAG
CAATTAGAGTCATTATTGGCAGGAAAGCAGGTTGCAAGAATTTATGCCCATTTTTATCAAGACGATATCGAACTCTTAAA
TACGATGCCGACAAGAGAACATTTTAAATGGATGTATGCATTCTTGTGTAAAAAAGGTGTGTTTGATTTCCGACGTTATG
GAGCCGAATTGGCGAAATATAAAGGATGGTCACTTCATACCATAAAATTTATGCTAACGGTGTTTTTTGAACTGAATTTT
GTTACAATGGATAATGGTATTCTTTCAGTTATAAAAAATCCGTCAAAACGAGATTTATCAGAATCGAAAACTTACCAATT
AAGACAGGAAATTATTCAATTGGAAAAAGAGTTGCTCTTTTCATCCTATAAACAATTAAAAAATAGTCTCGATAGATTTA
TCGGTACTGCAAATATGAAGGAGGCAAAGGCATGGATTTAG

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-768)

DHH family (DHH)

(82-225)

DHHA1 domain (DHHA1)

(308-437)

RecJ OB domain (RecJ_OB)

(454-560)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

51.742

98.601

0.51

Multiple sequence alignment