Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AACH72_RS12245 Genome accession   NZ_AP027931
Coordinates   2694404..2695843 (-) Length   479 a.a.
NCBI ID   WP_010635929.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain VA6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2689404..2700843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH72_RS12215 (VAWG001_23810) - 2689679..2690419 (+) 741 WP_206865942.1 KDGP aldolase family protein -
  AACH72_RS12220 (VAWG001_23820) - 2690524..2692428 (+) 1905 WP_213344284.1 PRD domain-containing protein -
  AACH72_RS12225 (VAWG001_23830) npr 2692444..2692716 (-) 273 WP_005305943.1 PTS phosphocarrier protein NPr -
  AACH72_RS12230 (VAWG001_23840) rapZ 2692737..2693603 (-) 867 WP_005305946.1 RNase adapter RapZ -
  AACH72_RS12235 (VAWG001_23850) ptsN 2693646..2694092 (-) 447 WP_005305951.1 PTS IIA-like nitrogen regulatory protein PtsN -
  AACH72_RS12240 (VAWG001_23860) hpf 2694095..2694382 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  AACH72_RS12245 (VAWG001_23870) rpoN/rpoN1 2694404..2695843 (-) 1440 WP_010635929.1 RNA polymerase factor sigma-54 Machinery gene
  AACH72_RS12250 (VAWG001_23880) lptB 2695909..2696634 (-) 726 WP_005305964.1 LPS export ABC transporter ATP-binding protein -
  AACH72_RS12255 (VAWG001_23890) lptA 2696638..2697165 (-) 528 WP_010635928.1 lipopolysaccharide transport periplasmic protein LptA -
  AACH72_RS12260 (VAWG001_23900) lptC 2697152..2697712 (-) 561 WP_213344285.1 LPS export ABC transporter periplasmic protein LptC -
  AACH72_RS12265 (VAWG001_23910) kdsC 2697709..2698263 (-) 555 WP_017766397.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  AACH72_RS12270 (VAWG001_23920) - 2698263..2699258 (-) 996 WP_005305976.1 KpsF/GutQ family sugar-phosphate isomerase -
  AACH72_RS12275 (VAWG001_23930) mlaF 2699466..2700266 (+) 801 WP_005305979.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53848.82 Da        Isoelectric Point: 4.3584

>NTDB_id=102890 AACH72_RS12245 WP_010635929.1 2694404..2695843(-) (rpoN/rpoN1) [Aeromonas dhakensis strain VA6]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENDVQETSPVDQVDVSQLDSSDAMAQDQMP
DELPVDTTWEEVYSAGTAQSAGPIHDGEDSIYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVSLED
IQAAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAREVILEHMDLLGNRDYRTLARK
TKLKENDLKEVLDLIQQLEPRPGNGVIQSESQYVIPDVSVVKKGNKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=102890 AACH72_RS12245 WP_010635929.1 2694404..2695843(-) (rpoN/rpoN1) [Aeromonas dhakensis strain VA6]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAAAACGACG
TTCAGGAGACCAGCCCGGTCGACCAGGTGGACGTCAGCCAGCTCGATTCCAGCGATGCCATGGCCCAGGACCAGATGCCG
GACGAACTGCCGGTGGATACCACTTGGGAAGAGGTCTACTCGGCCGGCACAGCCCAGAGCGCAGGCCCCATCCATGACGG
GGAAGACAGCATCTATCAGGGTGAGACCACCGAGAACCTGCAGGACTACCTGTTGTGGCAGATGCGCCTGACCCCGTTCA
GCGATGTGGATGCCGCCATCGCCCTCGCCATCATAGATGCCATCGACGAATCCGGTTACCTGACGGTGTCGCTTGAGGAT
ATTCAGGCGGCGGTGAGCAGCGAGGATGTCGAGGTGGAGCTCGATGAAGTGGAGGCCGTGCTCAAGCGGGTGCAACATTT
CGATCCGGTCGGTATCGCCGCCCGCTCGGTGCAGGAGTGCCTGCTGATCCAGCTGGGCCAGTACTCACCTGATCTGCCCT
GGCTCAACGAAGCCAGGGAGGTGATCCTTGAGCACATGGATCTGCTCGGCAACCGCGATTACCGCACCTTGGCCCGCAAG
ACCAAGCTGAAGGAGAACGACCTCAAGGAGGTGCTGGATCTCATCCAGCAGCTGGAGCCGCGGCCCGGCAACGGCGTCAT
CCAGAGCGAATCCCAGTACGTGATCCCGGATGTTTCCGTGGTCAAGAAGGGCAACAAGTGGGTGGTCGAGCTCAACCCTG
ACTCGGCCCCGCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCAGACAGGCTCGCACCAGTCAGGATACCCAGTTC
ATCCGCTCCCACCTGCAGGAAGCCAAGTGGTTCATCAAGAGTCTGGAGAGTCGCAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTCTTCGAATACGGTGAAGAGGCCATGAAACCCATGGTGCTCAACGACATCGCCG
AAGCGGTGGAGATGCACGAGTCGACCATCTCGCGGGTGACTACCCAGAAGTACATGCACACGCCGCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGCCATGTAAACACCGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCGGAGAATCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.866

100

0.486

Multiple sequence alignment