Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB4O71_RS14450 Genome accession   NZ_CP163122
Coordinates   2946557..2947186 (-) Length   209 a.a.
NCBI ID   WP_000839152.1    Uniprot ID   -
Organism   Escherichia coli strain W21 isolate China:Kunming     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2941557..2952186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4O71_RS14435 (AB4O71_14435) helD 2941799..2943853 (-) 2055 WP_001295354.1 DNA helicase IV -
  AB4O71_RS14440 (AB4O71_14440) yccF 2943976..2944422 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AB4O71_RS14445 (AB4O71_14445) yccS 2944432..2946594 (+) 2163 WP_023281787.1 YccS family putative transporter -
  AB4O71_RS14450 (AB4O71_14450) sxy/tfoX 2946557..2947186 (-) 630 WP_000839152.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AB4O71_RS14455 (AB4O71_14455) sulA 2947405..2947914 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AB4O71_RS14460 (AB4O71_14460) ompA 2948271..2949311 (+) 1041 WP_000750416.1 porin OmpA -
  AB4O71_RS14465 (AB4O71_14465) matP 2949387..2949839 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AB4O71_RS14470 (AB4O71_14470) ycbZ 2950025..2951785 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24093.97 Da        Isoelectric Point: 8.8133

>NTDB_id=1028882 AB4O71_RS14450 WP_000839152.1 2946557..2947186(-) (sxy/tfoX) [Escherichia coli strain W21 isolate China:Kunming]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVACRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1028882 AB4O71_RS14450 WP_000839152.1 2946557..2947186(-) (sxy/tfoX) [Escherichia coli strain W21 isolate China:Kunming]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCATG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment