Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LLA12_RS00340 Genome accession   NZ_LT599049
Coordinates   66936..67721 (-) Length   261 a.a.
NCBI ID   WP_021722894.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain A12     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 61936..72721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLA12_RS00315 (LLA12_00065) - 62538..63707 (+) 1170 WP_021722890.1 ring-cleaving dioxygenase -
  LLA12_RS00320 (LLA12_00066) - 63718..64308 (+) 591 WP_021722891.1 flavin reductase family protein -
  LLA12_RS00325 (LLA12_00067) rpmG 64387..64536 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  LLA12_RS00330 (LLA12_00068) rpmF 64566..64739 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  LLA12_RS00335 (LLA12_00069) - 65102..66883 (+) 1782 WP_021722893.1 heavy metal translocating P-type ATPase -
  LLA12_RS00340 (LLA12_00070) spo0J 66936..67721 (-) 786 WP_021722894.1 ParB/RepB/Spo0J family partition protein Regulator
  LLA12_RS00345 (LLA12_00071) rarA 67776..69035 (-) 1260 WP_010905110.1 replication-associated recombination protein A Machinery gene
  LLA12_RS00350 (LLA12_00072) - 69079..69567 (-) 489 WP_012896945.1 GNAT family N-acetyltransferase -
  LLA12_RS00355 (LLA12_00073) - 69720..70187 (+) 468 WP_021722895.1 DUF3013 family protein -
  LLA12_RS00360 (LLA12_00074) - 70217..71770 (+) 1554 WP_021722896.1 ABC-F family ATP-binding cassette domain-containing protein -
  LLA12_RS00365 (LLA12_00075) - 71901..72185 (+) 285 WP_010905114.1 hypothetical protein -
  LLA12_RS00370 (LLA12_00076) - 72223..72657 (+) 435 WP_021722897.1 YdeI/OmpD-associated family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29755.63 Da        Isoelectric Point: 9.5731

>NTDB_id=1028853 LLA12_RS00340 WP_021722894.1 66936..67721(-) (spo0J) [Lactococcus lactis subsp. lactis strain A12]
MVEQITQLKLSTIVKNPYQPRLVFDEDKLKELANSIQENGVLQPIIVRKSKLVGYELLAGERRFQASKLAGLETIPAIIR
SYSDEEMMTLSILENLQRENLNPLEESKSLAQLADKLGMTHDQIAKALGKSRSYVSNLIRLLGLPDTILKHVENREISPA
HARTLLAEKNPKKQLELVDKIIKEQLNVRALEAIIYGEEKVTDKSVSKLNINLFTDETEKELMKKLGNRVKIQANKKYQG
NLSIHFDNLDELEHLIKLLKK

Nucleotide


Download         Length: 786 bp        

>NTDB_id=1028853 LLA12_RS00340 WP_021722894.1 66936..67721(-) (spo0J) [Lactococcus lactis subsp. lactis strain A12]
ATGGTAGAACAAATCACTCAACTTAAGTTGTCAACAATTGTAAAAAACCCTTACCAGCCTCGTCTTGTTTTTGATGAGGA
TAAATTAAAAGAATTGGCTAATTCTATCCAAGAAAATGGCGTTTTACAACCCATAATCGTTCGTAAATCAAAACTTGTTG
GCTATGAGCTTTTAGCAGGTGAACGTCGGTTTCAAGCTTCAAAATTAGCTGGTTTAGAAACTATACCAGCAATTATTAGA
AGCTATTCTGATGAAGAAATGATGACTCTCTCAATTTTAGAAAATTTGCAGAGAGAAAATCTCAATCCACTAGAAGAGTC
TAAAAGCTTGGCACAATTGGCTGACAAATTGGGAATGACCCACGATCAAATCGCTAAGGCCCTTGGAAAATCAAGGTCTT
ATGTCTCTAATCTTATTCGTTTACTTGGTTTGCCTGACACAATTTTGAAGCATGTTGAAAATCGAGAGATTTCACCTGCT
CACGCTAGAACACTTTTAGCTGAAAAAAATCCTAAAAAGCAATTAGAGCTCGTTGATAAAATAATTAAAGAGCAGCTCAA
TGTCAGAGCACTTGAAGCTATTATTTATGGTGAAGAAAAAGTTACTGACAAATCTGTCAGTAAATTAAATATCAATCTTT
TTACTGACGAAACTGAAAAAGAACTGATGAAAAAATTGGGAAACAGGGTTAAGATTCAAGCAAATAAAAAATATCAAGGG
AATTTATCCATTCACTTTGATAATCTTGATGAACTAGAACATCTAATAAAATTACTAAAAAAATAA

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(147-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

48.047

98.084

0.471