Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB4O84_RS15605 Genome accession   NZ_CP163076
Coordinates   3172655..3173269 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain W115     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3167655..3178269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4O84_RS15590 (AB4O84_15590) helD 3167879..3169933 (-) 2055 WP_044700756.1 DNA helicase IV -
  AB4O84_RS15595 (AB4O84_15595) - 3170059..3170505 (+) 447 WP_003035892.1 YccF domain-containing protein -
  AB4O84_RS15600 (AB4O84_15600) yccS 3170524..3172677 (+) 2154 WP_032941200.1 YccS family putative transporter -
  AB4O84_RS15605 (AB4O84_15605) sxy/tfoX 3172655..3173269 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  AB4O84_RS15610 (AB4O84_15610) sulA 3173487..3173996 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  AB4O84_RS15615 (AB4O84_15615) ompA 3174354..3175412 (+) 1059 WP_368988285.1 porin OmpA -
  AB4O84_RS15620 (AB4O84_15620) matP 3175504..3175956 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  AB4O84_RS15625 (AB4O84_15625) - 3176142..3177902 (+) 1761 WP_003035878.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=1028680 AB4O84_RS15605 WP_003035889.1 3172655..3173269(-) (sxy/tfoX) [Citrobacter freundii strain W115]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1028680 AB4O84_RS15605 WP_003035889.1 3172655..3173269(-) (sxy/tfoX) [Citrobacter freundii strain W115]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATTTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGCATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment