Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   RL465_RS06705 Genome accession   NZ_LT594504
Coordinates   1386669..1387274 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli isolate E. coli RL465     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1381669..1392274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RL465_RS25850 - 1382223..1382321 (+) 99 Protein_1309 hypothetical protein -
  RL465_RS06675 rsmS 1382374..1382535 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  RL465_RS06680 priC 1382549..1383076 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  RL465_RS06685 ybaN 1383146..1383523 (+) 378 WP_001188905.1 DUF454 family protein -
  RL465_RS06690 apt 1383676..1384227 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  RL465_RS06695 dnaX 1384356..1386287 (+) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  RL465_RS06700 ybaB 1386340..1386669 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  RL465_RS06705 recR 1386669..1387274 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  RL465_RS06710 htpG 1387384..1389258 (+) 1875 WP_000678213.1 molecular chaperone HtpG -
  RL465_RS06715 adk 1389439..1390083 (+) 645 WP_001220233.1 adenylate kinase -
  RL465_RS06720 hemH 1390319..1391281 (+) 963 WP_001250088.1 ferrochelatase -
  RL465_RS06725 aes 1391278..1392237 (-) 960 WP_000801846.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1028641 RL465_RS06705 WP_001195025.1 1386669..1387274(+) (recR) [Escherichia coli isolate E. coli RL465]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1028641 RL465_RS06705 WP_001195025.1 1386669..1387274(+) (recR) [Escherichia coli isolate E. coli RL465]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443