Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   RL465_RS02845 Genome accession   NZ_LT594504
Coordinates   583090..583566 (-) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli isolate E. coli RL465     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 578090..588566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RL465_RS25935 - 579818..579932 (-) 115 Protein_543 integrase -
  RL465_RS02815 - 580307..581149 (-) 843 WP_074417327.1 DUF4942 domain-containing protein -
  RL465_RS02820 - 581234..581431 (-) 198 WP_074417334.1 DUF957 domain-containing protein -
  RL465_RS02825 - 581443..581931 (-) 489 WP_074417328.1 DUF5983 family protein -
  RL465_RS02830 - 581928..582305 (-) 378 WP_074417329.1 TA system toxin CbtA family protein -
  RL465_RS02835 cbeA 582352..582726 (-) 375 WP_001605875.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  RL465_RS02840 - 582800..583021 (-) 222 WP_074417330.1 DUF987 domain-containing protein -
  RL465_RS02845 radC 583090..583566 (-) 477 WP_001186725.1 RadC family protein Machinery gene
  RL465_RS02850 - 583582..584067 (-) 486 WP_074417331.1 antirestriction protein -
  RL465_RS02855 - 584158..584976 (-) 819 WP_074417332.1 DUF932 domain-containing protein -
  RL465_RS02860 - 585304..588150 (-) 2847 WP_021536654.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=1028632 RL465_RS02845 WP_001186725.1 583090..583566(-) (radC) [Escherichia coli isolate E. coli RL465]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1028632 RL465_RS02845 WP_001186725.1 583090..583566(-) (radC) [Escherichia coli isolate E. coli RL465]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGTACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGACATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399