Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB4O86_RS07620 Genome accession   NZ_CP163057
Coordinates   1634979..1635605 (+) Length   208 a.a.
NCBI ID   WP_023299743.1    Uniprot ID   A0A9X7L0J6
Organism   Enterobacter hormaechei strain W139     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1629979..1640605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4O86_RS07600 (AB4O86_07600) - 1630378..1632138 (-) 1761 WP_023305819.1 Lon protease family protein -
  AB4O86_RS07605 (AB4O86_07605) matP 1632325..1632777 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  AB4O86_RS07610 (AB4O86_07610) ompA 1632843..1633895 (-) 1053 WP_017694761.1 porin OmpA -
  AB4O86_RS07615 (AB4O86_07615) sulA 1634252..1634761 (-) 510 WP_032610196.1 SOS-induced cell division inhibitor SulA -
  AB4O86_RS07620 (AB4O86_07620) sxy/tfoX 1634979..1635605 (+) 627 WP_023299743.1 TfoX/Sxy family DNA transformation protein Regulator
  AB4O86_RS07625 (AB4O86_07625) yccS 1635562..1637724 (-) 2163 WP_023305820.1 YccS family putative transporter -
  AB4O86_RS07630 (AB4O86_07630) - 1637743..1638189 (-) 447 WP_023299745.1 YccF domain-containing protein -
  AB4O86_RS07635 (AB4O86_07635) helD 1638312..1640366 (+) 2055 WP_032676335.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23988.54 Da        Isoelectric Point: 9.4592

>NTDB_id=1028627 AB4O86_RS07620 WP_023299743.1 1634979..1635605(+) (sxy/tfoX) [Enterobacter hormaechei strain W139]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=1028627 AB4O86_RS07620 WP_023299743.1 1634979..1635605(+) (sxy/tfoX) [Enterobacter hormaechei strain W139]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTATTCGCGATGGTGTCTGACGGTGAGCTTTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCTTCTTTTCTGACCCTGATGAAACGAGGACGTCCTGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACTAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572

Multiple sequence alignment