Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   C7S03_RS14125 Genome accession   NZ_LT592163
Coordinates   1787401..1787544 (+) Length   47 a.a.
NCBI ID   WP_050171221.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_W     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1782401..1792544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S03_RS10405 - 1782496..1782621 (-) 126 Protein_1811 IS110 family transposase -
  C7S03_RS10420 (WHOW_01966) - 1783409..1783765 (+) 357 Protein_1812 pilin -
  C7S03_RS10425 (WHOW_01967) - 1784292..1784690 (+) 399 Protein_1813 pilin -
  C7S03_RS10440 (WHOW_01968) lpxC 1785404..1786327 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  C7S03_RS10445 (WHOW_01969) - 1786456..1786857 (+) 402 Protein_1815 pilin -
  C7S03_RS14120 - 1786995..1787098 (+) 104 Protein_1816 pilin -
  C7S03_RS14125 pilE 1787401..1787544 (+) 144 WP_050171221.1 hypothetical protein Machinery gene
  C7S03_RS10465 (WHOW_01970) - 1787913..1788143 (+) 231 Protein_1818 pilin -
  C7S03_RS10475 (WHOW_01971) - 1788759..1789541 (+) 783 Protein_1819 opacity family porin -
  C7S03_RS13635 - 1789555..1789770 (+) 216 WP_169300636.1 hypothetical protein -
  C7S03_RS10480 (WHOW_01972C) pilA 1789806..1791059 (-) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5049.51 Da        Isoelectric Point: 6.1895

>NTDB_id=1028536 C7S03_RS14125 WP_050171221.1 1787401..1787544(+) (pilE) [Neisseria gonorrhoeae strain WHO_W]
MTGFNDAAGNEKIDTKHLPSTCRDESSAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=1028536 C7S03_RS14125 WP_050171221.1 1787401..1787544(+) (pilE) [Neisseria gonorrhoeae strain WHO_W]
ATGACGGGATTTAATGATGCCGCCGGCAACGAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.333

63.83

0.468