Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB4O94_RS16365 Genome accession   NZ_CP163011
Coordinates   3282666..3283262 (-) Length   198 a.a.
NCBI ID   WP_023289053.1    Uniprot ID   A0A2N4W2M8
Organism   Klebsiella quasipneumoniae strain W187     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3277666..3288262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4O94_RS16350 (AB4O94_16350) helD 3277877..3279931 (-) 2055 WP_117135764.1 DNA helicase IV -
  AB4O94_RS16355 (AB4O94_16355) - 3280056..3280502 (+) 447 WP_004201437.1 YccF domain-containing protein -
  AB4O94_RS16360 (AB4O94_16360) yccS 3280520..3282655 (+) 2136 WP_023289054.1 YccS family putative transporter -
  AB4O94_RS16365 (AB4O94_16365) sxy/tfoX 3282666..3283262 (-) 597 WP_023289053.1 TfoX/Sxy family DNA transformation protein Regulator
  AB4O94_RS16370 (AB4O94_16370) - 3283280..3283585 (-) 306 WP_156835198.1 hypothetical protein -
  AB4O94_RS16375 (AB4O94_16375) sulA 3283611..3284120 (+) 510 WP_023289052.1 SOS-induced cell division inhibitor SulA -
  AB4O94_RS16380 (AB4O94_16380) ompA 3284473..3285543 (+) 1071 WP_023289051.1 porin OmpA -
  AB4O94_RS16385 (AB4O94_16385) matP 3285690..3286142 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  AB4O94_RS16390 (AB4O94_16390) - 3286328..3288085 (+) 1758 WP_165457577.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22670.34 Da        Isoelectric Point: 10.2333

>NTDB_id=1028454 AB4O94_RS16365 WP_023289053.1 3282666..3283262(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain W187]
MRKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKYRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWASAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1028454 AB4O94_RS16365 WP_023289053.1 3282666..3283262(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain W187]
ATGAGAAAACTCGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCTCCGCTGGGTCAACTTCACTCTCGTCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGGAATATTTATCTAAAGGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACACGGGCGCATCGTGCCGCTAAAG
TATTATCAAATCGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTGTCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATATCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCCAATATCAGTTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATTCCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGCGAGAACAAT
GCTTCTCTATCGCACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTTCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGTCTGCGCGCTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N4W2M8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

49.746

99.495

0.495

Multiple sequence alignment