Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AB4O95_RS20180 Genome accession   NZ_CP163007
Coordinates   4195966..4197399 (+) Length   477 a.a.
NCBI ID   WP_047060252.1    Uniprot ID   -
Organism   Enterobacter asburiae strain W207     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4190966..4202399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4O95_RS20150 (AB4O95_20150) - 4191533..4192510 (+) 978 WP_094934467.1 calcium/sodium antiporter -
  AB4O95_RS20155 (AB4O95_20155) kdsD 4192524..4193510 (+) 987 WP_196355043.1 arabinose-5-phosphate isomerase KdsD -
  AB4O95_RS20160 (AB4O95_20160) kdsC 4193525..4194091 (+) 567 WP_196355064.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  AB4O95_RS20165 (AB4O95_20165) lptC 4194088..4194663 (+) 576 WP_033146749.1 LPS export ABC transporter periplasmic protein LptC -
  AB4O95_RS20170 (AB4O95_20170) lptA 4194632..4195186 (+) 555 WP_033146750.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  AB4O95_RS20175 (AB4O95_20175) lptB 4195193..4195918 (+) 726 WP_033146751.1 LPS export ABC transporter ATP-binding protein -
  AB4O95_RS20180 (AB4O95_20180) rpoN/rpoN1 4195966..4197399 (+) 1434 WP_047060252.1 RNA polymerase factor sigma-54 Machinery gene
  AB4O95_RS20185 (AB4O95_20185) hpf 4197422..4197709 (+) 288 WP_008501444.1 ribosome hibernation promoting factor -
  AB4O95_RS20190 (AB4O95_20190) ptsN 4197792..4198283 (+) 492 WP_008501443.1 PTS IIA-like nitrogen regulatory protein PtsN -
  AB4O95_RS20195 (AB4O95_20195) rapZ 4198329..4199183 (+) 855 WP_014885397.1 RNase adapter RapZ -
  AB4O95_RS20200 (AB4O95_20200) npr 4199180..4199452 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  AB4O95_RS20205 (AB4O95_20205) mtgA 4199492..4200217 (-) 726 WP_064673371.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  AB4O95_RS20210 (AB4O95_20210) elbB 4200214..4200867 (-) 654 WP_167818742.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54197.95 Da        Isoelectric Point: 4.3173

>NTDB_id=1028433 AB4O95_RS20180 WP_047060252.1 4195966..4197399(+) (rpoN/rpoN1) [Enterobacter asburiae strain W207]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESMGDEEIELEEIEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWLDEARLIISDHLDLLANHDFRSLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNDRWVVELNSDSIPRLQINQQYASMCTSARNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=1028433 AB4O95_RS20180 WP_047060252.1 4195966..4197399(+) (rpoN/rpoN1) [Enterobacter asburiae strain W207]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAACTGGCAATGACGCCGCAGCTACAGCAGGCAATTCGCCTGTTGCA
ACTGTCCACGTTAGAACTTCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAACCCCCTGCTGGAACAAACCGATCTTCATG
ACGAGGTAGATACTCAGCAGTCACAGGATACAGAAGCGCTCGACACCGCGGATGCACTCGAACAAAAAGAGATGCCCGAC
GAGCTACCGCTGGATGCCAGCTGGGATGAAATCTACACCGCCGGAACCCCTTCCGGTACGCGTGCAGACTACCAGGATGA
TGAGCTACCGGTCTATCAGGGAGAAACCACCCAGTCGCTGCAGGATTACCTGATGTGGCAGGTGGAACTTACCCCCTTCT
CCGATACCGACCGCGCGATTGCCACCTCAATTGTCGATGCCGTTGACGACACCGGCTATTTGACCGTCACGCTGGACGAT
ATCCTGGAAAGCATGGGCGACGAAGAGATTGAACTTGAGGAGATCGAAGCCGTTCTGAAGCGCATCCAGCGTTTCGATCC
GGTAGGCGTGGCCGCAAAAGATCTGCGCGACTGCCTGCTGATCCAGCTTTCTCAGTTCAGCAAAGAGACGCCATGGCTCG
ACGAGGCGCGCTTAATCATCAGCGATCATCTGGATCTGTTGGCCAACCACGATTTCCGCAGCCTGATGCGCGTCACGCGC
CTGAAGGAAGAGGTGCTGAAAGAAGCGGTGAATCTGATCCAGTCACTCGATCCGCGCCCGGGACAGTCGATCCAGACCAG
CGAGCCCGAGTACGTCATCCCGGACGTGCTGGTGAGAAAACACAATGACCGCTGGGTCGTTGAACTGAATTCAGACAGCA
TCCCTCGCCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGCGCGTAACGACTCCGACAATCAATATATTCGT
AGCAATCTTCAGGAAGCGCGATGGCTGATCAAAAGTCTGGAAAGCCGAAATGATACGCTGCTGCGCGTCAGCCGCTGTAT
TGTCGAACAGCAGCAGGCGTTCTTTGAGCAGGGCGAAGAGTATATGAAACCGATGGTACTGGCGGATATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGTGTCACCACGCAGAAGTATCTGCACAGTCCACGCGGTATATTTGAGCTTAAG
TATTTCTTCTCCAGCCATGTGAATACCGAGGGCGGCGGCGAAGCGTCGTCAACGGCCATTCGTGCCCTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTAAGCGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCCAACCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.545

100

0.482

Multiple sequence alignment