Detailed information NTG1028342

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB4P00_RS21410
• Genome accession: NZ_CP162992
• Coordinates: 4358013..4358813 (+)
• Length: 266 a.a.
• NCBI ID: WP_004191960.1
• Uniprot ID: A0AAJ5B1F9
• Organism: Klebsiella pneumoniae strain W281
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4353013..4363813

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4P00_RS21375 (AB4P00_21375)	gspH	4353169..4353684 (+)	516	WP_032422016.1	type II secretion system minor pseudopilin GspH	-
AB4P00_RS21380 (AB4P00_21380)	gspI	4353681..4354046 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AB4P00_RS21385 (AB4P00_21385)	gspJ	4354043..4354639 (+)	597	WP_032433846.1	type II secretion system minor pseudopilin GspJ	-
AB4P00_RS21390 (AB4P00_21390)	gspK	4354636..4355622 (+)	987	WP_077255453.1	type II secretion system minor pseudopilin GspK	-
AB4P00_RS21395 (AB4P00_21395)	gspL	4355609..4356802 (+)	1194	WP_032416685.1	type II secretion system protein GspL	-
AB4P00_RS21400 (AB4P00_21400)	-	4356795..4357280 (+)	486	WP_004145896.1	type II secretion system protein M	-
AB4P00_RS21405 (AB4P00_21405)	-	4357270..4358016 (+)	747	WP_004145897.1	type II secretion system protein N	-
AB4P00_RS21410 (AB4P00_21410)	pilD	4358013..4358813 (+)	801	WP_004191960.1	A24 family peptidase	Machinery gene
AB4P00_RS21415 (AB4P00_21415)	hrpB	4358861..4361290 (-)	2430	WP_032433845.1	ATP-dependent helicase HrpB	-
AB4P00_RS21420 (AB4P00_21420)	thpR	4361363..4361899 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
AB4P00_RS21425 (AB4P00_21425)	sfsA	4361899..4362615 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AB4P00_RS21430 (AB4P00_21430)	dksA	4362778..4363233 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=1028342 AB4P00_RS21410 WP_004191960.1 4358013..4358813(+) (pilD) [Klebsiella pneumoniae strain W281]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=1028342 AB4P00_RS21410 WP_004191960.1 4358013..4358813(+) (pilD) [Klebsiella pneumoniae strain W281]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421