Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AABK19_RS13660 Genome accession   NZ_AP027902
Coordinates   2787282..2787911 (-) Length   209 a.a.
NCBI ID   WP_072712306.1    Uniprot ID   -
Organism   Escherichia coli strain 2018-11-1BCC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2782282..2792911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK19_RS13645 (VEE49_26370) helD 2782524..2784578 (-) 2055 WP_001295354.1 DNA helicase IV -
  AABK19_RS13650 (VEE49_26380) yccF 2784701..2785147 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AABK19_RS13655 (VEE49_26390) yccS 2785157..2787319 (+) 2163 WP_000875061.1 YccS family putative transporter -
  AABK19_RS13660 (VEE49_26400) sxy/tfoX 2787282..2787911 (-) 630 WP_072712306.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AABK19_RS13665 (VEE49_26410) sulA 2788130..2788639 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AABK19_RS13670 (VEE49_26430) ompA 2788996..2790036 (+) 1041 WP_000750416.1 porin OmpA -
  AABK19_RS13675 (VEE49_26440) matP 2790112..2790564 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AABK19_RS13680 (VEE49_26450) ycbZ 2790750..2792510 (+) 1761 WP_338385775.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24146.03 Da        Isoelectric Point: 9.4081

>NTDB_id=102819 AABK19_RS13660 WP_072712306.1 2787282..2787911(-) (sxy/tfoX) [Escherichia coli strain 2018-11-1BCC]
MKSLSYKRIYKSQQYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=102819 AABK19_RS13660 WP_072712306.1 2787282..2787911(-) (sxy/tfoX) [Escherichia coli strain 2018-11-1BCC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAACAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment