Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB4P09_RS18535 Genome accession   NZ_CP162949
Coordinates   3866674..3867297 (-) Length   207 a.a.
NCBI ID   WP_032688494.1    Uniprot ID   A0A2X2DYW5
Organism   Raoultella planticola strain CXW225     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3861674..3872297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P09_RS18520 (AB4P09_18520) helD 3861910..3863964 (-) 2055 WP_143718608.1 DNA helicase IV -
  AB4P09_RS18525 (AB4P09_18525) - 3864087..3864533 (+) 447 WP_004860167.1 YccF domain-containing protein -
  AB4P09_RS18530 (AB4P09_18530) yccS 3864551..3866686 (+) 2136 WP_032700361.1 YccS family putative transporter -
  AB4P09_RS18535 (AB4P09_18535) sxy/tfoX 3866674..3867297 (-) 624 WP_032688494.1 TfoX/Sxy family DNA transformation protein Regulator
  AB4P09_RS18540 (AB4P09_18540) sulA 3867757..3868266 (+) 510 WP_032688495.1 SOS-induced cell division inhibitor SulA -
  AB4P09_RS18545 (AB4P09_18545) ompA 3868619..3869689 (+) 1071 WP_032688496.1 porin OmpA -
  AB4P09_RS18550 (AB4P09_18550) matP 3869795..3870247 (-) 453 WP_004860155.1 macrodomain Ter protein MatP -
  AB4P09_RS18555 (AB4P09_18555) - 3870433..3872190 (+) 1758 WP_032688497.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23308.02 Da        Isoelectric Point: 9.7117

>NTDB_id=1028182 AB4P09_RS18535 WP_032688494.1 3866674..3867297(-) (sxy/tfoX) [Raoultella planticola strain CXW225]
MKKMSSLRFHQLQECLSPLGKISCRPLFGGYSLAIDDTVFAMVAEGEIYLKICEQSAEYRVVHATPLLTMRKNGRPVLLK
YYQVDETLWGDSKTLFNLSASSLQSARNEKRLQHASGRLKDLPNISFHMELLLINAGVSDEKMLRQFGAEKVWLKLRESN
KALTLNVLYALEGAIAGVHSAALPTQRRQELKVWAGSQHKNIDLYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=1028182 AB4P09_RS18535 WP_032688494.1 3866674..3867297(-) (sxy/tfoX) [Raoultella planticola strain CXW225]
ATGAAGAAAATGTCATCTTTACGGTTCCATCAACTCCAGGAATGTTTATCTCCACTCGGCAAAATAAGCTGTCGCCCGCT
CTTTGGCGGCTACAGCCTTGCCATAGACGATACCGTTTTTGCCATGGTCGCCGAGGGCGAAATCTATCTTAAAATTTGTG
AGCAGAGCGCGGAATATCGCGTTGTGCATGCCACTCCACTCTTGACGATGCGAAAAAATGGTCGCCCGGTCTTACTGAAA
TATTATCAGGTTGACGAGACCCTCTGGGGGGATAGCAAAACGCTTTTCAATCTATCGGCGTCCTCATTACAAAGTGCACG
CAATGAAAAGCGTCTACAGCATGCGTCCGGAAGATTAAAAGATCTCCCGAATATCAGTTTTCATATGGAGCTGCTGTTGA
TTAACGCAGGCGTGAGCGATGAAAAAATGCTCCGTCAGTTTGGTGCGGAGAAAGTCTGGTTGAAATTGCGGGAATCAAAC
AAAGCACTCACGTTGAATGTTCTCTATGCGCTGGAAGGGGCTATTGCCGGAGTGCATTCCGCAGCGCTCCCGACGCAGCG
GCGTCAGGAGCTTAAGGTATGGGCCGGCAGCCAGCACAAAAATATCGATCTTTACTCGGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X2DYW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.284

95.169

0.498

Multiple sequence alignment