Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   WHOZ_RS12480 Genome accession   NZ_LT592146
Coordinates   2082118..2083086 (-) Length   322 a.a.
NCBI ID   WP_003694627.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO O     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2077118..2088086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHOZ_RS12455 - 2077660..2078967 (-) 1308 WP_047918067.1 YadA-like family protein -
  WHOZ_RS12460 (WHOO_02293) - 2078953..2079606 (+) 654 Protein_2104 IS1595 family transposase -
  WHOZ_RS12465 (WHOO_02294C) - 2079641..2080399 (-) 759 WP_003687045.1 ABC transporter ATP-binding protein -
  WHOZ_RS12470 (WHOO_02295C) - 2080483..2081109 (-) 627 WP_003687047.1 FmdE family protein -
  WHOZ_RS12475 (WHOO_02296C) - 2081154..2082128 (-) 975 WP_003687049.1 iron chelate uptake ABC transporter family permease subunit -
  WHOZ_RS12480 (WHOO_02297C) ceuB 2082118..2083086 (-) 969 WP_003694627.1 ABC transporter permease Machinery gene
  WHOZ_RS12485 - 2083105..2083296 (-) 192 WP_162098494.1 hypothetical protein -
  WHOZ_RS12490 (WHOO_02298C) - 2083314..2084279 (-) 966 WP_003687054.1 siderophore ABC transporter substrate-binding protein -
  WHOZ_RS12495 (WHOO_02299C) fetA 2084431..2086596 (-) 2166 WP_003687055.1 TonB-dependent siderophore receptor FetA/FrpB -
  WHOZ_RS12500 (WHOO_02300) - 2087099..2087389 (+) 291 WP_003687059.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34400.69 Da        Isoelectric Point: 10.0891

>NTDB_id=1028043 WHOZ_RS12480 WP_003694627.1 2082118..2083086(-) (ceuB) [Neisseria gonorrhoeae strain WHO O]
MTAKPFSLNLANLLLPAVLFAVSLSVGIADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFVAY
EFEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIVSRLMGDRLRQSLPAVALLGASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=1028043 WHOZ_RS12480 WP_003694627.1 2082118..2083086(-) (ceuB) [Neisseria gonorrhoeae strain WHO O]
ATGACTGCCAAACCTTTTTCCCTCAACCTGGCCAACCTCCTGCTGCCGGCGGTGTTGTTTGCCGTCAGCCTGTCGGTCGG
CATTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCCGACAGCCAACAGGTCATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGTTGACGGGCGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGCAACCGTTTTGTC
GAGCCTTCTATGGCGGGTGCGGGCCAAAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGCTGATCGGGATGTTGGTCTTTATGCTGCTGATCCGCCGCCTGCCGC
CGACGGCGCAGCTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCGACGTTTGTCGCGTAT
GAGTTTGAGATGCTGCAAATGTTGGGCGTGTGGCAGCAGGGCGACTTTTCAAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTACCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAGACGGTCA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGTTTGATTATTGTGGCACTGATTACATCGCTGGTCATT
GTAACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAATATCGTCAGCCGCCTGATGGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTCGCCCTCTTGGGCGCGTCTTTGGTTTTATTGTGCGACATTATCGGACGCGTGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTATTAAGGAAACCTGCCCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(17-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.528

93.478

0.388